-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1076

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 67, 144
Couldn't classify 2874, 2961
Sorry, prediction GeneMark_model.108852_t fails validation.
(GAT)	 AG	67-144	GT	AGG
(GGC)	 AG	1830-1871	GT	CGG
(GGG)	 AG	1896-1912	GT	TGG
(TCT)	 AG	1989-2001	GT	TGG
(GGT)	 AG	2575-2689	GT	AGG
(GGG)	 AG	2874-2961	GT	CGG
-recovered GeneMark_model.108852_t, internal, 67, 144
-recovered GeneMark_model.108852_t, internal, 1830, 1871
-recovered GeneMark_model.108852_t, internal, 1896, 1912
-recovered GeneMark_model.108852_t, internal, 1989, 2001
-recovered GeneMark_model.108852_t, internal, 2575, 2689
-recovered GeneMark_model.108852_t, internal, 2874, 2961
Couldn't classify 2874, 2961
Sorry, prediction snap_scaffold_1076-snap.1-T1 fails validation.
(ATG)	 GG	68-144	GT	AGG
(GGC)	 AG	1830-1871	GT	CGG
(GGT)	 AG	2575-2689	GT	AGG
(GGG)	 AG	2874-2961	GT	CGG
-recovered snap_scaffold_1076-snap.1-T1, initial, 68, 144
-recovered snap_scaffold_1076-snap.1-T1, internal, 1830, 1871
-recovered snap_scaffold_1076-snap.1-T1, internal, 2575, 2689
-recovered snap_scaffold_1076-snap.1-T1, internal, 2874, 2961
Valid prediction for GlimmerHMM_glimmerT_62444-T1
Couldn't classify 2874, 2961
Sorry, prediction Augustus_model.g41509.t1 fails validation.
(ATG)	 CC	2606-2689	GT	AGG
(GGG)	 AG	2874-2961	GT	CGG
-recovered Augustus_model.g41509.t1, initial, 2606, 2689
-recovered Augustus_model.g41509.t1, internal, 2874, 2961

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3350
-exon list size: 18


building trellis

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-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support