-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1075

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 158, 264
Sorry, prediction GeneMark_model.108849_t fails validation.
(CCT)	 AG	158-264	GT	ACG
(GAG)	 AG	838-960	GC	AGG
(GCA)	 AG	988-1006	GT	AGG
(GAG)	 AG	1093-1128	TG	AAT
-recovered GeneMark_model.108849_t, terminal, 1093, 1128
-recovered GeneMark_model.108849_t, internal, 158, 264
-recovered GeneMark_model.108849_t, internal, 838, 960
-recovered GeneMark_model.108849_t, internal, 988, 1006
Valid prediction for GeneMark_model.108850_t
Couldn't classify 99, 264
Couldn't classify 3214, 3315
Sorry, prediction snap_scaffold_1075-snap.2-T1 fails validation.
(GGA)	 AG	99-264	GT	ACG
(TTT)	 AG	1575-1669	GT	AGG
(GAG)	 AG	2134-2344	GT	AGG
(TCC)	 AG	3214-3315	GT	GAG
-recovered snap_scaffold_1075-snap.2-T1, internal, 99, 264
-recovered snap_scaffold_1075-snap.2-T1, internal, 1575, 1669
-recovered snap_scaffold_1075-snap.2-T1, internal, 2134, 2344
-recovered snap_scaffold_1075-snap.2-T1, internal, 3214, 3315

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 87, 189
Sorry, prediction GlimmerHMM_glimmerT_62443-T1 fails validation.
(CTG)	 AG	87-189	GT	AGG
(CCT)	 AG	1126-1295	GT	GAG
(GGA)	 AG	3096-3182	AG	GAA
-recovered GlimmerHMM_glimmerT_62443-T1, terminal, 3096, 3182
-recovered GlimmerHMM_glimmerT_62443-T1, internal, 87, 189
-recovered GlimmerHMM_glimmerT_62443-T1, internal, 1126, 1295
Couldn't classify 3096, 3310
Sorry, prediction Augustus_model.g41508.t1 fails validation.
(ATG)	 CA	165-189	GT	AGG
(CCT)	 AG	1126-1303	GT	CAG
(GGA)	 AG	3096-3310	GT	AGG
-recovered Augustus_model.g41508.t1, initial, 165, 189
-recovered Augustus_model.g41508.t1, internal, 1126, 1303
-recovered Augustus_model.g41508.t1, internal, 3096, 3310
Couldn't classify 21, 189
Sorry, prediction GeneMark_model.108851_t fails validation.
(GTG)	 AG	21-189	GT	AGG
(ATT)	 AG	396-400	CA	GAC
-recovered GeneMark_model.108851_t, terminal, 396, 400
-recovered GeneMark_model.108851_t, internal, 21, 189
Couldn't classify 87, 189
Couldn't classify 3096, 3310
Sorry, prediction snap_scaffold_1075-snap.1-T1 fails validation.
(CTG)	 AG	87-189	GT	AGG
(CCT)	 AG	1126-1303	GT	CAG
(GGA)	 AG	3096-3310	GT	AGG
-recovered snap_scaffold_1075-snap.1-T1, internal, 87, 189
-recovered snap_scaffold_1075-snap.1-T1, internal, 1126, 1303
-recovered snap_scaffold_1075-snap.1-T1, internal, 3096, 3310

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3278, rend_intergenic: 99  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3364
-exon list size: 43


building trellis

2.2    
4.4    
6.7    
8.9    
11.1    
13.3    
15.6    
17.8    
20.0    
22.2    
24.4    
26.7    
28.9    
31.1    
33.3    
35.6    
37.8    
40.0    
42.2    
44.4    
46.7    
48.9    
51.1    
53.3    
55.6    
57.8    
60.0    
62.2    
64.4    
66.7    
68.9    
71.1    
73.3    
75.6    
77.8    
80.0    
82.2    
84.4    
86.7    
88.9    
91.1    
93.3    
95.6    
97.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3278, rend_intergenic: 99  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support