-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1070

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 478, 745
Sorry, prediction snap_scaffold_1070-snap.1-T1 fails validation.
(GGG)	 AG	478-745	GT	GAG
-recovered snap_scaffold_1070-snap.1-T1, internal, 478, 745
Couldn't classify 478, 503
Sorry, prediction GeneMark_model.108843_t fails validation.
(GGG)	 AG	478-503	GT	GGG
(ATT)	 AG	529-561	GT	AGG
(AGG)	 AG	584-649	GT	TCG
(GAT)	 AG	674-745	GT	GAG
(AGG)	 AG	774-782	GT	GAG
(GGA)	 AG	816-884	GT	AAG
(GGA)	 AG	910-937	TA	GAT
-recovered GeneMark_model.108843_t, terminal, 910, 937
-recovered GeneMark_model.108843_t, internal, 478, 503
-recovered GeneMark_model.108843_t, internal, 529, 561
-recovered GeneMark_model.108843_t, internal, 584, 649
-recovered GeneMark_model.108843_t, internal, 674, 745
-recovered GeneMark_model.108843_t, internal, 774, 782
-recovered GeneMark_model.108843_t, internal, 816, 884
Valid prediction for GeneMark_model.108844_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3386
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support