-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_107

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106583_t
Couldn't classify 14245, 14396
Sorry, prediction snap_scaffold_107-snap.3-T1 fails validation.
(ATG)	 AA	6906-7151	GT	TGG
(AGC)	 AG	7340-7480	GT	CGG
(CTC)	 AG	8988-9057	GT	AGG
(TGG)	 AG	9107-9251	GT	AGG
(GAC)	 AG	14023-14104	GT	CGG
(CTA)	 AG	14245-14396	GT	CAG
-recovered snap_scaffold_107-snap.3-T1, initial, 6906, 7151
-recovered snap_scaffold_107-snap.3-T1, internal, 7340, 7480
-recovered snap_scaffold_107-snap.3-T1, internal, 8988, 9057
-recovered snap_scaffold_107-snap.3-T1, internal, 9107, 9251
-recovered snap_scaffold_107-snap.3-T1, internal, 14023, 14104
-recovered snap_scaffold_107-snap.3-T1, internal, 14245, 14396
Valid prediction for GlimmerHMM_glimmerT_61299-T1
Valid prediction for GeneMark_model.106582_t
Valid prediction for GlimmerHMM_glimmerT_61298-T1
Valid prediction for snap_scaffold_107-snap.2-T1
Valid prediction for Augustus_model.g40777.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 15086, 15184
Sorry, prediction Augustus_model.g40776.t1 fails validation.
(ATG)	 CG	12022-12093	GT	AGG
(CGT)	 AG	13696-13806	GT	AGG
(GCG)	 AG	14563-14712	GT	TGG
(CTG)	 AG	14813-14920	GT	AGG
(CTG)	 AG	15086-15184	GT	GGG
-recovered Augustus_model.g40776.t1, initial, 12022, 12093
-recovered Augustus_model.g40776.t1, internal, 13696, 13806
-recovered Augustus_model.g40776.t1, internal, 14563, 14712
-recovered Augustus_model.g40776.t1, internal, 14813, 14920
-recovered Augustus_model.g40776.t1, internal, 15086, 15184
Valid prediction for Augustus_model.g40778.t1
Couldn't classify 15086, 15184
Sorry, prediction GeneMark_model.106581_t fails validation.
(ATG)	 AC	14483-14493	GT	AGG
(GGA)	 AG	14604-14712	GT	TGG
(CTG)	 AG	14813-14920	GT	AGG
(CTG)	 AG	15086-15184	GT	GGG
-recovered GeneMark_model.106581_t, initial, 14483, 14493
-recovered GeneMark_model.106581_t, internal, 14604, 14712
-recovered GeneMark_model.106581_t, internal, 14813, 14920
-recovered GeneMark_model.106581_t, internal, 15086, 15184
Valid prediction for GlimmerHMM_glimmerT_61297-T1
Valid prediction for snap_scaffold_107-snap.4-T1
Couldn't classify 31, 110
Sorry, prediction GeneMark_model.106584_t fails validation.
(AAC)	 AG	31-110	GT	GAG
(AAC)	 AG	136-442	GT	CTG
(CTG)	 AG	1039-1272	GT	AGG
(GGG)	 AG	1874-1879	GG	AGG
-recovered GeneMark_model.106584_t, terminal, 31, 110
-recovered GeneMark_model.106584_t, terminal, 1874, 1879
-recovered GeneMark_model.106584_t, internal, 31, 110
-recovered GeneMark_model.106584_t, internal, 136, 442
-recovered GeneMark_model.106584_t, internal, 1039, 1272
Couldn't classify 15086, 15184
Sorry, prediction snap_scaffold_107-snap.1-T1 fails validation.
(ATG)	 CG	10120-10312	GT	TGG
(CCG)	 AG	11996-12093	GT	AGG
(CGT)	 AG	13696-13806	GT	AGG
(GCG)	 AG	14563-14712	GT	TGG
(CTG)	 AG	14813-14920	GT	AGG
(CTG)	 AG	15086-15184	GT	GGG
-recovered snap_scaffold_107-snap.1-T1, initial, 10120, 10312
-recovered snap_scaffold_107-snap.1-T1, internal, 11996, 12093
-recovered snap_scaffold_107-snap.1-T1, internal, 13696, 13806
-recovered snap_scaffold_107-snap.1-T1, internal, 14563, 14712
-recovered snap_scaffold_107-snap.1-T1, internal, 14813, 14920
-recovered snap_scaffold_107-snap.1-T1, internal, 15086, 15184
Couldn't classify 1039, 1272
Sorry, prediction GlimmerHMM_glimmerT_61300-T1 fails validation.
(CTG)	 AG	1039-1272	GT	AGG
(AAT)	 AG	3060-3182	GT	AGG
(GTG)	 AG	3823-3861	GT	AGG
(GTG)	 AG	5915-6319	GT	GGG
(TGA)	 AG	6828-6830	GA	GAG
-recovered GlimmerHMM_glimmerT_61300-T1, terminal, 6828, 6830
-recovered GlimmerHMM_glimmerT_61300-T1, internal, 1039, 1272
-recovered GlimmerHMM_glimmerT_61300-T1, internal, 3060, 3182
-recovered GlimmerHMM_glimmerT_61300-T1, internal, 3823, 3861
-recovered GlimmerHMM_glimmerT_61300-T1, internal, 5915, 6319
Valid prediction for GlimmerHMM_glimmerT_61296-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 14396, rend_intergenic: 7415  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 15282
-exon list size: 68


building trellis

1.4    
2.9    
4.3    
5.7    
7.1    
8.6    
10.0    
11.4    
12.9    
14.3    
15.7    
17.1    
18.6    
20.0    
21.4    
22.9    
24.3    
25.7    
27.1    
28.6    
30.0    
31.4    
32.9    
34.3    
35.7    
37.1    
38.6    
40.0    
41.4    
42.9    
44.3    
45.7    
47.1    
48.6    
50.0    
51.4    
52.9    
54.3    
55.7    
57.1    
58.6    
60.0    
61.4    
62.9    
64.3    
65.7    
67.1    
68.6    
70.0    
71.4    
72.9    
74.3    
75.7    
77.1    
78.6    
80.0    
81.4    
82.9    
84.3    
85.7    
87.1    
88.6    
90.0    
91.4    
92.9    
94.3    
95.7    
97.1    
98.6    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 14396, rend_intergenic: 7415  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support