-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1068

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1227, 1415
Sorry, prediction GeneMark_model.108841_t fails validation.
(AGA)	 AG	1227-1415	GT	GGG
(GCA)	 AG	2048-2065	GT	GAG
(TTT)	 AG	2377-2590	GT	CAG
(ATG)	 AG	2681-2787	GT	GCG
(AGA)	 AG	2834-2923	GT	GTG
(TGT)	 AG	2940-2975	GT	GAG
(AGA)	 AG	3013-3027	GT	GAG
(TGA)	 AG	3055-3145	TG	AGT
-recovered GeneMark_model.108841_t, initial, 2681, 2787
-recovered GeneMark_model.108841_t, terminal, 3013, 3027
-recovered GeneMark_model.108841_t, terminal, 3055, 3145
-recovered GeneMark_model.108841_t, internal, 1227, 1415
-recovered GeneMark_model.108841_t, internal, 2048, 2065
-recovered GeneMark_model.108841_t, internal, 2377, 2590
-recovered GeneMark_model.108841_t, internal, 2681, 2787
-recovered GeneMark_model.108841_t, internal, 2834, 2923
-recovered GeneMark_model.108841_t, internal, 2940, 2975
-recovered GeneMark_model.108841_t, internal, 3013, 3027
Valid prediction for Augustus_model.g41503.t1
Couldn't classify 871, 904
Couldn't classify 2681, 2819
Sorry, prediction snap_scaffold_1068-snap.2-T1 fails validation.
(AGA)	 AG	871-904	GT	AGG
(TTT)	 AG	2377-2524	GT	TGG
(ATG)	 AG	2681-2819	GT	GGG
-recovered snap_scaffold_1068-snap.2-T1, initial, 2681, 2819
-recovered snap_scaffold_1068-snap.2-T1, internal, 871, 904
-recovered snap_scaffold_1068-snap.2-T1, internal, 2377, 2524
-recovered snap_scaffold_1068-snap.2-T1, internal, 2681, 2819
Valid prediction for GlimmerHMM_glimmerT_62441-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62441-T1 2353-2677-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 842, 1115
Couldn't classify 2948, 3062
Sorry, prediction snap_scaffold_1068-snap.1-T1 fails validation.
(GGT)	 AG	842-1115	GT	TGG
(AAG)	 AG	2770-2850	GT	AGG
(GTG)	 AG	2948-3062	GT	TGG
-recovered snap_scaffold_1068-snap.1-T1, internal, 842, 1115
-recovered snap_scaffold_1068-snap.1-T1, internal, 2770, 2850
-recovered snap_scaffold_1068-snap.1-T1, internal, 2948, 3062

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2554, rend_intergenic: 871  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3395
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 2554, rend_intergenic: 871  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support