-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1067

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108839_t
add_exon() Sorry, GeneMark_model.108839_t 295-399-internal-1 is invalid.
add_exon() Sorry, GeneMark_model.108839_t 538-597-internal-1 is invalid.
add_exon() Sorry, GeneMark_model.108839_t 2274-2354-internal-1 is invalid.
add_exon() Sorry, GeneMark_model.108839_t 2608-2673-internal-1 is invalid.
add_exon() Sorry, GeneMark_model.108839_t 2856-2974-terminal-3 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 237, 474
Sorry, prediction GlimmerHMM_glimmerT_62440-T1 fails validation.
(GGG)	 AG	237-474	GT	CAG
(CCC)	 AG	1003-1104	GT	CAG
(AGC)	 AG	1380-1463	CG	AGC
-recovered GlimmerHMM_glimmerT_62440-T1, terminal, 1380, 1463
-recovered GlimmerHMM_glimmerT_62440-T1, internal, 237, 474
-recovered GlimmerHMM_glimmerT_62440-T1, internal, 1003, 1104
Valid prediction for GeneMark_model.108840_t
Couldn't classify 197, 312
Couldn't classify 348, 474
Sorry, prediction snap_scaffold_1067-snap.1-T1 fails validation.
(TCT)	 AG	197-312	GT	TCG
(GAT)	 AG	348-474	GT	CAG
-recovered snap_scaffold_1067-snap.1-T1, internal, 197, 312
-recovered snap_scaffold_1067-snap.1-T1, internal, 348, 474

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3396
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support