-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1065

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3178, 3294
Sorry, prediction GlimmerHMM_glimmerT_62437-T1 fails validation.
(ATG)	 AC	700-781	GT	AGG
(TGC)	 AG	3178-3294	GT	AGG
-recovered GlimmerHMM_glimmerT_62437-T1, initial, 700, 781
-recovered GlimmerHMM_glimmerT_62437-T1, internal, 3178, 3294
Couldn't classify 3218, 3294
Sorry, prediction GeneMark_model.108836_t fails validation.
(ATG)	 GA	711-781	GT	AGG
(ATC)	 AG	870-962	GT	ATG
(AGA)	 AG	1001-1072	GT	TTG
(GGG)	 AG	1155-1163	GT	CAG
(AGG)	 AG	1191-1199	GT	CAG
(AGA)	 AG	2200-2217	GT	AGG
(AGG)	 AG	2256-2264	GT	CAG
(GCT)	 AG	2294-2320	GT	GAG
(GCT)	 AG	2342-2377	GT	AAG
(AAC)	 AG	2500-2508	GT	AAG
(AGG)	 AG	2596-2667	GT	GAG
(AAC)	 AG	3218-3294	GT	AGG
-recovered GeneMark_model.108836_t, initial, 711, 781
-recovered GeneMark_model.108836_t, internal, 870, 962
-recovered GeneMark_model.108836_t, internal, 1001, 1072
-recovered GeneMark_model.108836_t, internal, 1155, 1163
-recovered GeneMark_model.108836_t, internal, 1191, 1199
-recovered GeneMark_model.108836_t, internal, 2200, 2217
-recovered GeneMark_model.108836_t, internal, 2256, 2264
-recovered GeneMark_model.108836_t, internal, 2294, 2320
-recovered GeneMark_model.108836_t, internal, 2342, 2377
-recovered GeneMark_model.108836_t, internal, 2500, 2508
-recovered GeneMark_model.108836_t, internal, 2596, 2667
-recovered GeneMark_model.108836_t, internal, 3218, 3294
Couldn't classify 3178, 3294
Sorry, prediction snap_scaffold_1065-snap.2-T1 fails validation.
(ATG)	 AC	700-790	GT	AGG
(TGC)	 AG	3178-3294	GT	AGG
-recovered snap_scaffold_1065-snap.2-T1, initial, 700, 790
-recovered snap_scaffold_1065-snap.2-T1, internal, 3178, 3294

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 201, 290
Couldn't classify 2900, 3095
Sorry, prediction snap_scaffold_1065-snap.1-T1 fails validation.
(CCA)	 AG	201-290	GT	AGG
(GGA)	 AG	2558-2718	GT	AGG
(ATA)	 AG	2900-3095	GT	ACG
-recovered snap_scaffold_1065-snap.1-T1, internal, 201, 290
-recovered snap_scaffold_1065-snap.1-T1, internal, 2558, 2718
-recovered snap_scaffold_1065-snap.1-T1, internal, 2900, 3095
Valid prediction for GlimmerHMM_glimmerT_62436-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3203, rend_intergenic: 700  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3403
-exon list size: 34


building trellis

2.8    
5.6    
8.3    
11.1    
13.9    
16.7    
19.4    
22.2    
25.0    
27.8    
30.6    
33.3    
36.1    
38.9    
41.7    
44.4    
47.2    
50.0    
52.8    
55.6    
58.3    
61.1    
63.9    
66.7    
69.4    
72.2    
75.0    
77.8    
80.6    
83.3    
86.1    
88.9    
91.7    
94.4    
97.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3203, rend_intergenic: 700  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support