-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1064

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 811, 825
Sorry, prediction GeneMark_model.108835_t fails validation.
(AGA)	 AG	811-825	GT	GGG
(GGA)	 AG	853-885	GT	GTG
(GGG)	 AG	911-1057	GT	ATG
(TAA)	 AG	1082-1121	GT	AAG
(GCC)	 AG	1419-1444	GT	TTG
(AGA)	 AG	2216-2248	GT	GCG
(TCA)	 AG	2443-2467	TT	AAT
-recovered GeneMark_model.108835_t, terminal, 2443, 2467
-recovered GeneMark_model.108835_t, internal, 811, 825
-recovered GeneMark_model.108835_t, internal, 853, 885
-recovered GeneMark_model.108835_t, internal, 911, 1057
-recovered GeneMark_model.108835_t, internal, 1082, 1121
-recovered GeneMark_model.108835_t, internal, 1419, 1444
-recovered GeneMark_model.108835_t, internal, 2216, 2248

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3408
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support