-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1062

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 34, 45
Sorry, prediction GeneMark_model.108830_t fails validation.
(ACA)	 AG	34-45	GT	TTG
(AGA)	 AG	135-143	GC	GAG
(GGG)	 AG	2329-2448	GT	GGG
(AGG)	 AG	2478-2513	GT	GAG
(GGG)	 AG	2541-2640	AT	GAA
-recovered GeneMark_model.108830_t, terminal, 2541, 2640
-recovered GeneMark_model.108830_t, internal, 34, 45
-recovered GeneMark_model.108830_t, internal, 135, 143
-recovered GeneMark_model.108830_t, internal, 2329, 2448
-recovered GeneMark_model.108830_t, internal, 2478, 2513

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 39, 59
Sorry, prediction GeneMark_model.108831_t fails validation.
(GAG)	 AG	39-59	GT	GAG
(AGG)	 AG	82-168	GT	GAG
(GAG)	 AG	215-305	GA	GAG
-recovered GeneMark_model.108831_t, terminal, 215, 305
-recovered GeneMark_model.108831_t, internal, 39, 59
-recovered GeneMark_model.108831_t, internal, 82, 168

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3410
-exon list size: 18


building trellis

5.0    
10.0    
15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support