-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1061

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 560, 566
Sorry, prediction GeneMark_model.108828_t fails validation.
(GAG)	 AG	560-566	GT	GGG
(ACT)	 AG	2749-2883	TC	AGT
-recovered GeneMark_model.108828_t, terminal, 2749, 2883
-recovered GeneMark_model.108828_t, internal, 560, 566

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 155, 169
Sorry, prediction GeneMark_model.108829_t fails validation.
(GCG)	 AG	155-169	GT	ACG
(AAC)	 AG	191-259	GT	CGG
(GCA)	 AG	360-402	CC	AGC
-recovered GeneMark_model.108829_t, terminal, 360, 402
-recovered GeneMark_model.108829_t, internal, 155, 169
-recovered GeneMark_model.108829_t, internal, 191, 259

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3422
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support