-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1059

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2402, 2558
Sorry, prediction snap_scaffold_1059-snap.1-T1 fails validation.
(GAG)	 AG	2402-2558	GT	AGG
(CCA)	 AG	3103-3340	CG	GAC
-recovered snap_scaffold_1059-snap.1-T1, terminal, 3103, 3340
-recovered snap_scaffold_1059-snap.1-T1, internal, 2402, 2558
Couldn't classify 3073, 3290
Sorry, prediction GeneMark_model.108825_t fails validation.
(ATG)	 CC	653-660	GT	GTG
(AGG)	 AG	2394-2558	GT	AGG
(AGG)	 AG	2592-2687	GT	CTG
(AAA)	 AG	2852-2875	GT	GGG
(AGA)	 AG	2909-2983	GT	GAG
(AGA)	 AG	3005-3037	GT	GAG
(GAC)	 AG	3073-3290	GT	GGG
-recovered GeneMark_model.108825_t, initial, 653, 660
-recovered GeneMark_model.108825_t, internal, 2394, 2558
-recovered GeneMark_model.108825_t, internal, 2592, 2687
-recovered GeneMark_model.108825_t, internal, 2852, 2875
-recovered GeneMark_model.108825_t, internal, 2909, 2983
-recovered GeneMark_model.108825_t, internal, 3005, 3037
-recovered GeneMark_model.108825_t, internal, 3073, 3290
Valid prediction for GlimmerHMM_glimmerT_62434-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62434-T1 3189-3340-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108824_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3428
-exon list size: 18


building trellis

5.0    
10.0    
15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support