-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1056

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 538, 767
Sorry, prediction snap_scaffold_1056-snap.1-T1 fails validation.
(CTT)	 AG	538-767	GT	AGG
-recovered snap_scaffold_1056-snap.1-T1, internal, 538, 767
Couldn't classify 572, 652
Sorry, prediction GeneMark_model.108819_t fails validation.
(GAG)	 AG	572-652	GT	GGG
(GGG)	 AG	687-767	GT	AGG
(GGT)	 AG	2745-2753	GT	AGG
-recovered GeneMark_model.108819_t, terminal, 2745, 2753
-recovered GeneMark_model.108819_t, internal, 572, 652
-recovered GeneMark_model.108819_t, internal, 687, 767
-recovered GeneMark_model.108819_t, internal, 2745, 2753

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3436
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support