-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1054

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62433-T1
Valid prediction for snap_scaffold_1054-snap.1-T1
add_exon() Sorry, snap_scaffold_1054-snap.1-T1 1898-2417-terminal-1 is invalid.
Couldn't classify 3397, 3417
Sorry, prediction GeneMark_model.108817_t fails validation.
(ATG)	 AT	888-898	GT	AAG
(AGG)	 AG	1916-2278	GC	GGG
(GGA)	 AG	2883-2900	GT	GAG
(AGA)	 AG	2939-2959	GT	CAG
(AGG)	 AG	2996-3007	GT	CAG
(CAG)	 AG	3032-3082	GT	CAG
(AGG)	 AG	3105-3128	GT	CAG
(GAG)	 AG	3151-3204	GT	CAG
(GGG)	 AG	3227-3265	GT	CAG
(AGG)	 AG	3286-3297	GT	CAG
(AAC)	 AG	3336-3374	GT	CAG
(AAC)	 AG	3397-3417	GT	CAG
-recovered GeneMark_model.108817_t, initial, 888, 898
-recovered GeneMark_model.108817_t, internal, 1916, 2278
-recovered GeneMark_model.108817_t, internal, 2883, 2900
-recovered GeneMark_model.108817_t, internal, 2939, 2959
-recovered GeneMark_model.108817_t, internal, 2996, 3007
-recovered GeneMark_model.108817_t, internal, 3032, 3082
-recovered GeneMark_model.108817_t, internal, 3105, 3128
-recovered GeneMark_model.108817_t, internal, 3151, 3204
-recovered GeneMark_model.108817_t, internal, 3227, 3265
-recovered GeneMark_model.108817_t, internal, 3286, 3297
-recovered GeneMark_model.108817_t, internal, 3336, 3374
-recovered GeneMark_model.108817_t, internal, 3397, 3417

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3176, 3427
Sorry, prediction GeneMark_model.108816_t fails validation.
(ATG)	 AC	2696-2715	GT	AGG
(AAA)	 AG	2736-2900	GT	GAG
(TGA)	 AG	2926-3042	GT	GAG
(ACA)	 AG	3176-3427	GT	GAG
-recovered GeneMark_model.108816_t, initial, 2696, 2715
-recovered GeneMark_model.108816_t, internal, 2736, 2900
-recovered GeneMark_model.108816_t, internal, 2926, 3042
-recovered GeneMark_model.108816_t, internal, 3176, 3427

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3440
-exon list size: 28


building trellis

3.3    
6.7    
10.0    
13.3    
16.7    
20.0    
23.3    
26.7    
30.0    
33.3    
36.7    
40.0    
43.3    
46.7    
50.0    
53.3    
56.7    
60.0    
63.3    
66.7    
70.0    
73.3    
76.7    
80.0    
83.3    
86.7    
90.0    
93.3    
96.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support