-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1053

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2944, 3041
Sorry, prediction GlimmerHMM_glimmerT_62432-T1 fails validation.
(ATG)	 AG	390-392	GT	TGG
(AAG)	 AG	2944-3041	GT	TCG
-recovered GlimmerHMM_glimmerT_62432-T1, initial, 390, 392
-recovered GlimmerHMM_glimmerT_62432-T1, internal, 390, 392
-recovered GlimmerHMM_glimmerT_62432-T1, internal, 2944, 3041
Couldn't classify 58, 129
Sorry, prediction GeneMark_model.108815_t fails validation.
(AGA)	 AG	58-129	GT	GAG
(AGA)	 AG	151-171	GT	ATG
(AGA)	 AG	265-273	GT	GGG
(GAA)	 AG	317-346	GT	AGG
(GAA)	 AG	372-392	GT	TGG
(GTG)	 AG	496-547	GG	GAG
-recovered GeneMark_model.108815_t, terminal, 496, 547
-recovered GeneMark_model.108815_t, internal, 58, 129
-recovered GeneMark_model.108815_t, internal, 151, 171
-recovered GeneMark_model.108815_t, internal, 265, 273
-recovered GeneMark_model.108815_t, internal, 317, 346
-recovered GeneMark_model.108815_t, internal, 372, 392

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3445
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support