-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1052

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 116, 187
Couldn't classify 2829, 3066
Sorry, prediction snap_scaffold_1052-snap.1-T1 fails validation.
(GTC)	 AG	116-187	GT	TGG
(GAA)	 AG	2829-3066	GT	GGG
-recovered snap_scaffold_1052-snap.1-T1, internal, 116, 187
-recovered snap_scaffold_1052-snap.1-T1, internal, 2829, 3066
Couldn't classify 116, 207
Sorry, prediction Augustus_model.g41498.t1 fails validation.
(GTC)	 AG	116-207	GT	AGG
(GAC)	 AG	270-324	AG	AGA
-recovered Augustus_model.g41498.t1, terminal, 270, 324
-recovered Augustus_model.g41498.t1, internal, 116, 207
Valid prediction for GlimmerHMM_glimmerT_62431-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62431-T1 2897-3078-terminal-1 is invalid.
Couldn't classify 116, 187
Couldn't classify 2953, 3066
Sorry, prediction GeneMark_model.108814_t fails validation.
(GTC)	 AG	116-187	GT	TGG
(TTC)	 AG	283-320	GT	ATG
(AGA)	 AG	2953-3066	GT	GGG
-recovered GeneMark_model.108814_t, internal, 116, 187
-recovered GeneMark_model.108814_t, internal, 283, 320
-recovered GeneMark_model.108814_t, internal, 2953, 3066

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3445
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support