-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_105

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1408, 1470
Sorry, prediction snap_scaffold_105-snap.1-T1 fails validation.
(GTC)	 AG	1408-1470	GT	AGG
(CTA)	 AG	3672-3702	GT	TGG
(GTT)	 AG	5120-5476	AG	AGA
-recovered snap_scaffold_105-snap.1-T1, terminal, 5120, 5476
-recovered snap_scaffold_105-snap.1-T1, internal, 1408, 1470
-recovered snap_scaffold_105-snap.1-T1, internal, 3672, 3702
Valid prediction for GeneMark_model.106572_t
Valid prediction for GeneMark_model.106574_t
Couldn't classify 15259, 15545
Sorry, prediction Augustus_model.g40773.t1 fails validation.
(ATG)	 AC	15259-15545		TT
Couldn't classify 15259, 15545
Sorry, prediction GlimmerHMM_glimmerT_61294-T1 fails validation.
(ATG)	 AC	15259-15545		TT
Valid prediction for GeneMark_model.106570_t
Valid prediction for snap_scaffold_105-snap.3-T1
Valid prediction for snap_scaffold_105-snap.4-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40772.t1
Valid prediction for GlimmerHMM_glimmerT_61292-T1
Valid prediction for GlimmerHMM_glimmerT_61293-T1
Couldn't classify 206, 272
Couldn't classify 11875, 11888
Sorry, prediction snap_scaffold_105-snap.2-T1 fails validation.
(GCT)	 AG	206-272	GT	ATG
(GTT)	 AG	751-833	GT	AGG
(AGC)	 AG	976-1065	GT	TGG
(TAT)	 AG	1261-1324	GT	ACG
(GAG)	 AG	5997-6117	GT	GGG
(TAA)	 AG	8303-8394	GT	AGG
(CTG)	 AG	11875-11888	GT	AGG
-recovered snap_scaffold_105-snap.2-T1, internal, 206, 272
-recovered snap_scaffold_105-snap.2-T1, internal, 751, 833
-recovered snap_scaffold_105-snap.2-T1, internal, 976, 1065
-recovered snap_scaffold_105-snap.2-T1, internal, 1261, 1324
-recovered snap_scaffold_105-snap.2-T1, internal, 5997, 6117
-recovered snap_scaffold_105-snap.2-T1, internal, 8303, 8394
-recovered snap_scaffold_105-snap.2-T1, internal, 11875, 11888
Valid prediction for GeneMark_model.106571_t
Valid prediction for GeneMark_model.106573_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5476, rend_intergenic: 3658  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15340, rend_intergenic: 5491  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 15545
-exon list size: 75


building trellis

1.3    
2.6    
3.9    
5.2    
6.5    
7.8    
9.1    
10.4    
11.7    
13.0    
14.3    
15.6    
16.9    
18.2    
19.5    
20.8    
22.1    
23.4    
24.7    
26.0    
27.3    
28.6    
29.9    
31.2    
32.5    
33.8    
35.1    
36.4    
37.7    
39.0    
40.3    
41.6    
42.9    
44.2    
45.5    
46.8    
48.1    
49.4    
50.6    
51.9    
53.2    
54.5    
55.8    
57.1    
58.4    
59.7    
61.0    
62.3    
63.6    
64.9    
66.2    
67.5    
68.8    
70.1    
71.4    
72.7    
74.0    
75.3    
76.6    
77.9    
79.2    
80.5    
81.8    
83.1    
84.4    
85.7    
87.0    
88.3    
89.6    
90.9    
92.2    
93.5    
94.8    
96.1    
97.4    
98.7    
-found 5 predictions from path traversal
Error with prediction: snap lend_intergenic: 5476, rend_intergenic: 3658  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15340, rend_intergenic: 5491  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support