-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1048

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 34, 157
Couldn't classify 2937, 3147
Sorry, prediction snap_scaffold_1048-snap.1-T1 fails validation.
(GTG)	 AG	34-157	GT	TGG
(CTC)	 AG	328-480	GT	TGG
(CGT)	 AG	1065-1174	GT	CTG
(TTT)	 AG	2937-3147	GT	AGG
-recovered snap_scaffold_1048-snap.1-T1, internal, 34, 157
-recovered snap_scaffold_1048-snap.1-T1, internal, 328, 480
-recovered snap_scaffold_1048-snap.1-T1, internal, 1065, 1174
-recovered snap_scaffold_1048-snap.1-T1, internal, 2937, 3147
Couldn't classify 77, 157
Sorry, prediction Augustus_model.g41497.t1 fails validation.
(AGG)	 AG	77-157	GT	TGG
(CTC)	 AG	328-480	GT	TGG
(CGT)	 AG	1065-1174	GT	CTG
(TTT)	 AG	2937-3179	CC	AGC
-recovered Augustus_model.g41497.t1, terminal, 2937, 3179
-recovered Augustus_model.g41497.t1, internal, 77, 157
-recovered Augustus_model.g41497.t1, internal, 328, 480
-recovered Augustus_model.g41497.t1, internal, 1065, 1174
Couldn't classify 3038, 3147
Sorry, prediction GeneMark_model.108810_t fails validation.
(ATG)	 AC	2989-3005	GT	TTG
(GGA)	 AG	3038-3147	GT	AGG
-recovered GeneMark_model.108810_t, initial, 2989, 3005
-recovered GeneMark_model.108810_t, internal, 3038, 3147
Valid prediction for GlimmerHMM_glimmerT_62429-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 348, 463
Sorry, prediction snap_scaffold_1048-snap.2-T1 fails validation.
(GTC)	 AG	348-463	GT	AGG
(GTT)	 AG	2287-2387	GT	GGG
(CGG)	 AG	2408-2624	AG	GAA
-recovered snap_scaffold_1048-snap.2-T1, terminal, 2408, 2624
-recovered snap_scaffold_1048-snap.2-T1, internal, 348, 463
-recovered snap_scaffold_1048-snap.2-T1, internal, 2287, 2387
Valid prediction for GeneMark_model.108809_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3147, rend_intergenic: 842  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3465
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3147, rend_intergenic: 842  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support