-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1047

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3103, 3320
Sorry, prediction GlimmerHMM_glimmerT_62428-T1 fails validation.
(ATG)	 TC	310-390	GT	AGG
(GTG)	 AG	1977-2054	GT	AGG
(CCT)	 AG	2963-3020	GT	AGG
(CCA)	 AG	3103-3320	GT	AGG
-recovered GlimmerHMM_glimmerT_62428-T1, initial, 310, 390
-recovered GlimmerHMM_glimmerT_62428-T1, internal, 1977, 2054
-recovered GlimmerHMM_glimmerT_62428-T1, internal, 2963, 3020
-recovered GlimmerHMM_glimmerT_62428-T1, internal, 3103, 3320
Couldn't classify 175, 390
Couldn't classify 3103, 3320
Sorry, prediction Augustus_model.g41496.t1 fails validation.
(GTG)	 AG	175-390	GT	AGG
(GTG)	 AG	1977-2054	GT	AGG
(CCT)	 AG	2963-3020	GT	AGG
(CCA)	 AG	3103-3320	GT	AGG
-recovered Augustus_model.g41496.t1, internal, 175, 390
-recovered Augustus_model.g41496.t1, internal, 1977, 2054
-recovered Augustus_model.g41496.t1, internal, 2963, 3020
-recovered Augustus_model.g41496.t1, internal, 3103, 3320
Couldn't classify 175, 390
Couldn't classify 3103, 3320
Sorry, prediction snap_scaffold_1047-snap.1-T1 fails validation.
(GTG)	 AG	175-390	GT	AGG
(GTG)	 AG	1977-2054	GT	AGG
(CCT)	 AG	2963-3020	GT	AGG
(CCA)	 AG	3103-3320	GT	AGG
-recovered snap_scaffold_1047-snap.1-T1, internal, 175, 390
-recovered snap_scaffold_1047-snap.1-T1, internal, 1977, 2054
-recovered snap_scaffold_1047-snap.1-T1, internal, 2963, 3020
-recovered snap_scaffold_1047-snap.1-T1, internal, 3103, 3320
Couldn't classify 175, 239
Sorry, prediction GeneMark_model.108806_t fails validation.
(GTG)	 AG	175-239	GT	CAG
(GCC)	 AG	273-390	GT	AGG
(AAC)	 AG	1468-1476	AA	AGA
-recovered GeneMark_model.108806_t, terminal, 1468, 1476
-recovered GeneMark_model.108806_t, internal, 175, 239
-recovered GeneMark_model.108806_t, internal, 273, 390
Couldn't classify 3103, 3377
Sorry, prediction GeneMark_model.108808_t fails validation.
(ATG)	 AG	2975-3020	GT	AGG
(CCA)	 AG	3103-3377	GT	GGG
-recovered GeneMark_model.108808_t, initial, 2975, 3020
-recovered GeneMark_model.108808_t, internal, 2975, 3020
-recovered GeneMark_model.108808_t, internal, 3103, 3377

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108807_t
Couldn't classify 166, 274
Couldn't classify 3091, 3219
Sorry, prediction snap_scaffold_1047-snap.2-T1 fails validation.
(GCT)	 AG	166-274	GT	CGG
(CTG)	 AG	465-738	GT	AGG
(GGA)	 AG	3091-3219	GT	TGG
-recovered snap_scaffold_1047-snap.2-T1, internal, 166, 274
-recovered snap_scaffold_1047-snap.2-T1, internal, 465, 738
-recovered snap_scaffold_1047-snap.2-T1, internal, 3091, 3219
Valid prediction for GlimmerHMM_glimmerT_62427-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3320, rend_intergenic: 250  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3468
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3320, rend_intergenic: 250  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support