-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1046

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62425-T1
Couldn't classify 841, 1186
Couldn't classify 3221, 3400
Sorry, prediction Augustus_model.g41495.t1 fails validation.
(TCT)	 AG	841-1186	GT	CAG
(CCC)	 AG	2750-2991	GT	AGG
(GTG)	 AG	3221-3400	GT	AGG
-recovered Augustus_model.g41495.t1, internal, 841, 1186
-recovered Augustus_model.g41495.t1, internal, 2750, 2991
-recovered Augustus_model.g41495.t1, internal, 3221, 3400
Couldn't classify 841, 1186
Couldn't classify 3221, 3400
Sorry, prediction snap_scaffold_1046-snap.2-T1 fails validation.
(TCT)	 AG	841-1186	GT	CAG
(CCC)	 AG	2750-2991	GT	AGG
(GTG)	 AG	3221-3400	GT	AGG
-recovered snap_scaffold_1046-snap.2-T1, internal, 841, 1186
-recovered snap_scaffold_1046-snap.2-T1, internal, 2750, 2991
-recovered snap_scaffold_1046-snap.2-T1, internal, 3221, 3400
Valid prediction for GeneMark_model.108804_t
Couldn't classify 3221, 3400
Sorry, prediction GeneMark_model.108805_t fails validation.
(ATG)	 AC	2836-2991	GT	AGG
(GTG)	 AG	3221-3400	GT	AGG
-recovered GeneMark_model.108805_t, initial, 2836, 2991
-recovered GeneMark_model.108805_t, internal, 3221, 3400
Couldn't classify 3221, 3376
Sorry, prediction GlimmerHMM_glimmerT_62426-T1 fails validation.
(ATG)	 CC	2797-2991	GT	AGG
(GTG)	 AG	3221-3376	GT	GAG
-recovered GlimmerHMM_glimmerT_62426-T1, initial, 2797, 2991
-recovered GlimmerHMM_glimmerT_62426-T1, internal, 3221, 3376

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1046-snap.1-T1
Valid prediction for GeneMark_model.108803_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2894, rend_intergenic: 841  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3473
-exon list size: 18


building trellis

5.0    
10.0    
15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2894, rend_intergenic: 841  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support