-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1045

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1957, 2108
Sorry, prediction snap_scaffold_1045-snap.1-T1 fails validation.
(TCC)	 AG	1957-2108	GT	ATG
(GCC)	 AG	2327-2385	GT	CTG
(ACC)	 AG	2796-2840	AA	GAA
-recovered snap_scaffold_1045-snap.1-T1, terminal, 2796, 2840
-recovered snap_scaffold_1045-snap.1-T1, internal, 1957, 2108
-recovered snap_scaffold_1045-snap.1-T1, internal, 2327, 2385

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 32, 88
Sorry, prediction GeneMark_model.108802_t fails validation.
(GGC)	 AG	32-88	GT	AGG
(AGA)	 AG	797-829	GT	GAG
(AAA)	 AG	851-1006	GC	GAG
(AGA)	 AG	1035-1101	TG	GAT
-recovered GeneMark_model.108802_t, terminal, 1035, 1101
-recovered GeneMark_model.108802_t, internal, 32, 88
-recovered GeneMark_model.108802_t, internal, 797, 829
-recovered GeneMark_model.108802_t, internal, 851, 1006

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3480
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support