-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1044

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2872, 3169
Sorry, prediction snap_scaffold_1044-snap.1-T1 fails validation.
(GCA)	 AG	2872-3169	GT	AAG
-recovered snap_scaffold_1044-snap.1-T1, internal, 2872, 3169
Couldn't classify 3155, 3169
Sorry, prediction GeneMark_model.108801_t fails validation.
(ATG)	 AG	1505-1551	GT	CAG
(AGC)	 AG	2208-2312	GT	CAG
(AAA)	 AG	2971-2979	GT	AGG
(AGA)	 AG	3001-3009	GT	AGG
(GAG)	 AG	3035-3049	GT	AGG
(AAA)	 AG	3076-3099	GT	AGG
(AAA)	 AG	3121-3129	GT	AGG
(GAG)	 AG	3155-3169	GT	AAG
-recovered GeneMark_model.108801_t, initial, 1505, 1551
-recovered GeneMark_model.108801_t, internal, 1505, 1551
-recovered GeneMark_model.108801_t, internal, 2208, 2312
-recovered GeneMark_model.108801_t, internal, 2971, 2979
-recovered GeneMark_model.108801_t, internal, 3001, 3009
-recovered GeneMark_model.108801_t, internal, 3035, 3049
-recovered GeneMark_model.108801_t, internal, 3076, 3099
-recovered GeneMark_model.108801_t, internal, 3121, 3129
-recovered GeneMark_model.108801_t, internal, 3155, 3169

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 557, 676
Sorry, prediction GlimmerHMM_glimmerT_62424-T1 fails validation.
(ACA)	 AG	557-676	GT	GGG
(ACA)	 AG	1458-1516	TG	GAT
-recovered GlimmerHMM_glimmerT_62424-T1, terminal, 1458, 1516
-recovered GlimmerHMM_glimmerT_62424-T1, internal, 557, 676
Couldn't classify 3447, 3464
Sorry, prediction GeneMark_model.108800_t fails validation.
(ATG)	 CT	2269-2288	GT	GAG
(AAG)	 AG	2347-2385	GT	GGG
(ATA)	 AG	2437-2442	GT	CTG
(AGA)	 AG	2597-2683	GT	ACG
(AGG)	 AG	3290-3295	GT	AGG
(GAT)	 AG	3316-3330	GT	AGG
(GAG)	 AG	3351-3368	GT	AGG
(GAT)	 AG	3400-3423	GT	AGG
(GGA)	 AG	3447-3464	GT	AAG
-recovered GeneMark_model.108800_t, initial, 2269, 2288
-recovered GeneMark_model.108800_t, internal, 2347, 2385
-recovered GeneMark_model.108800_t, internal, 2437, 2442
-recovered GeneMark_model.108800_t, internal, 2597, 2683
-recovered GeneMark_model.108800_t, internal, 3290, 3295
-recovered GeneMark_model.108800_t, internal, 3316, 3330
-recovered GeneMark_model.108800_t, internal, 3351, 3368
-recovered GeneMark_model.108800_t, internal, 3400, 3423
-recovered GeneMark_model.108800_t, internal, 3447, 3464

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3482
-exon list size: 45


building trellis

2.1    
4.3    
6.4    
8.5    
10.6    
12.8    
14.9    
17.0    
19.1    
21.3    
23.4    
25.5    
27.7    
29.8    
31.9    
34.0    
36.2    
38.3    
40.4    
42.6    
44.7    
46.8    
48.9    
51.1    
53.2    
55.3    
57.4    
59.6    
61.7    
63.8    
66.0    
68.1    
70.2    
72.3    
74.5    
76.6    
78.7    
80.9    
83.0    
85.1    
87.2    
89.4    
91.5    
93.6    
95.7    
97.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support