-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1042

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62422-T1
Couldn't classify 102, 116
Sorry, prediction GeneMark_model.108796_t fails validation.
(GGG)	 AG	102-116	GT	GGG
(GGG)	 AG	148-168	GT	GGG
(AGC)	 AG	190-318	GT	TGG
(GGA)	 AG	340-370	GT	ATG
(CGG)	 AG	482-589	GA	AAG
-recovered GeneMark_model.108796_t, terminal, 482, 589
-recovered GeneMark_model.108796_t, internal, 102, 116
-recovered GeneMark_model.108796_t, internal, 148, 168
-recovered GeneMark_model.108796_t, internal, 190, 318
-recovered GeneMark_model.108796_t, internal, 340, 370
Couldn't classify 3432, 3473
Sorry, prediction GeneMark_model.108798_t fails validation.
(ATG)	 TG	2182-2201	GT	AGG
(GGC)	 AG	2272-2286	GT	AGG
(AGA)	 AG	2385-2410	GT	AGG
(GGG)	 AG	2520-2541	GT	TCG
(CAG)	 AG	2584-2634	GT	CCG
(AGA)	 AG	2657-2668	GT	GAG
(AGA)	 AG	2691-2699	GT	GAG
(AGA)	 AG	2745-2777	GT	AAG
(AGG)	 AG	2825-3151	GT	GGG
(TGC)	 AG	3432-3473	GC	AGG
-recovered GeneMark_model.108798_t, initial, 2182, 2201
-recovered GeneMark_model.108798_t, terminal, 2385, 2410
-recovered GeneMark_model.108798_t, internal, 2272, 2286
-recovered GeneMark_model.108798_t, internal, 2385, 2410
-recovered GeneMark_model.108798_t, internal, 2520, 2541
-recovered GeneMark_model.108798_t, internal, 2584, 2634
-recovered GeneMark_model.108798_t, internal, 2657, 2668
-recovered GeneMark_model.108798_t, internal, 2691, 2699
-recovered GeneMark_model.108798_t, internal, 2745, 2777
-recovered GeneMark_model.108798_t, internal, 2825, 3151
-recovered GeneMark_model.108798_t, internal, 3432, 3473

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108797_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3484
-exon list size: 47


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support