-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1041

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2235, 2276
Sorry, prediction GeneMark_model.108795_t fails validation.
(AAG)	 AG	2235-2276	GT	GAG
(AAA)	 AG	2308-2316	GT	TCG
(AGA)	 AG	2480-2650	GT	CTG
(AGA)	 AG	2690-2872	GT	GAG
(ACA)	 AG	2896-2905	AG	AGA
-recovered GeneMark_model.108795_t, terminal, 2896, 2905
-recovered GeneMark_model.108795_t, internal, 2235, 2276
-recovered GeneMark_model.108795_t, internal, 2308, 2316
-recovered GeneMark_model.108795_t, internal, 2480, 2650
-recovered GeneMark_model.108795_t, internal, 2690, 2872

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3294, 3323
Sorry, prediction Augustus_model.g41494.t1 fails validation.
(ATG)	 CT	2083-2137	GT	AGG
(AAG)	 AG	3015-3191	GT	AGG
(CTC)	 AG	3294-3323	GT	CGG
-recovered Augustus_model.g41494.t1, initial, 2083, 2137
-recovered Augustus_model.g41494.t1, internal, 3015, 3191
-recovered Augustus_model.g41494.t1, internal, 3294, 3323

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3487
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support