-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1040

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3327, 3482
Sorry, prediction GeneMark_model.108794_t fails validation.
(ATG)	 GA	3272-3303	GT	GCG
(CGC)	 AG	3327-3482	GC	GAG
-recovered GeneMark_model.108794_t, initial, 3272, 3303
-recovered GeneMark_model.108794_t, internal, 3327, 3482

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62421-T1
Valid prediction for snap_scaffold_1040-snap.1-T1
Valid prediction for GeneMark_model.108793_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3498
-exon list size: 8


building trellis

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-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support