-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_104

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g40771.t1
Valid prediction for GeneMark_model.106567_t
Couldn't classify 192, 314
Couldn't classify 15319, 15476
Sorry, prediction snap_scaffold_104-snap.1-T1 fails validation.
(ACA)	 AG	192-314	GT	GAG
(ACC)	 AG	2203-2276	GT	CGG
(GGC)	 AG	3235-3667	GT	ATG
(CTC)	 AG	15319-15476	GT	AGG
-recovered snap_scaffold_104-snap.1-T1, internal, 192, 314
-recovered snap_scaffold_104-snap.1-T1, internal, 2203, 2276
-recovered snap_scaffold_104-snap.1-T1, internal, 3235, 3667
-recovered snap_scaffold_104-snap.1-T1, internal, 15319, 15476
Couldn't classify 15319, 15516
Sorry, prediction GeneMark_model.106569_t fails validation.
(ATG)	 GC	14512-14519	GT	GAG
(TAT)	 AG	14629-14644	GT	AGG
(CTC)	 AG	15319-15516	GT	CTG
-recovered GeneMark_model.106569_t, initial, 14512, 14519
-recovered GeneMark_model.106569_t, internal, 14629, 14644
-recovered GeneMark_model.106569_t, internal, 15319, 15516
Valid prediction for GlimmerHMM_glimmerT_61291-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_104-snap.2-T1
Couldn't classify 15403, 15435
Sorry, prediction GeneMark_model.106566_t fails validation.
(ATG)	 CC	13266-13301	GT	CAG
(GGA)	 AG	13361-13452	GT	CAG
(AGG)	 AG	13486-13578	GT	GAG
(GGG)	 AG	13603-13662	GT	CAG
(AGA)	 AG	13702-13752	GT	CAG
(GAG)	 AG	13775-13789	GT	CAG
(TGC)	 AG	13823-14005	GT	GAG
(ACA)	 AG	14030-14162	GT	ATG
(AAT)	 AG	14615-14764	GT	AGG
(CAG)	 AG	15279-15313	GT	GTG
(GAG)	 AG	15403-15435	GT	GGG
-recovered GeneMark_model.106566_t, initial, 13266, 13301
-recovered GeneMark_model.106566_t, internal, 13361, 13452
-recovered GeneMark_model.106566_t, internal, 13486, 13578
-recovered GeneMark_model.106566_t, internal, 13603, 13662
-recovered GeneMark_model.106566_t, internal, 13702, 13752
-recovered GeneMark_model.106566_t, internal, 13775, 13789
-recovered GeneMark_model.106566_t, internal, 13823, 14005
-recovered GeneMark_model.106566_t, internal, 14030, 14162
-recovered GeneMark_model.106566_t, internal, 14615, 14764
-recovered GeneMark_model.106566_t, internal, 15279, 15313
-recovered GeneMark_model.106566_t, internal, 15403, 15435
Valid prediction for GeneMark_model.106568_t
Valid prediction for GlimmerHMM_glimmerT_61290-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 15476, rend_intergenic: 1432  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 15568
-exon list size: 57


building trellis

1.7    
3.4    
5.1    
6.8    
8.5    
10.2    
11.9    
13.6    
15.3    
16.9    
18.6    
20.3    
22.0    
23.7    
25.4    
27.1    
28.8    
30.5    
32.2    
33.9    
35.6    
37.3    
39.0    
40.7    
42.4    
44.1    
45.8    
47.5    
49.2    
50.8    
52.5    
54.2    
55.9    
57.6    
59.3    
61.0    
62.7    
64.4    
66.1    
67.8    
69.5    
71.2    
72.9    
74.6    
76.3    
78.0    
79.7    
81.4    
83.1    
84.7    
86.4    
88.1    
89.8    
91.5    
93.2    
94.9    
96.6    
98.3    
-found 4 predictions from path traversal
Error with prediction: snap lend_intergenic: 15476, rend_intergenic: 1432  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support