-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1034

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 115, 180
Sorry, prediction GeneMark_model.108787_t fails validation.
(AGG)	 AG	115-180	GT	TCG
(CAC)	 AG	207-288	GT	AGG
(CTA)	 AG	312-446	GT	AGG
(GTG)	 AG	543-644	AT	AAA
-recovered GeneMark_model.108787_t, terminal, 543, 644
-recovered GeneMark_model.108787_t, internal, 115, 180
-recovered GeneMark_model.108787_t, internal, 207, 288
-recovered GeneMark_model.108787_t, internal, 312, 446
Valid prediction for GlimmerHMM_glimmerT_62418-T1
Valid prediction for snap_scaffold_1034-snap.1-T1
Valid prediction for Augustus_model.g41492.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3508
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support