-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1031

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 287, 466
Couldn't classify 3140, 3193
Sorry, prediction snap_scaffold_1031-snap.1-T1 fails validation.
(ATC)	 AG	287-466	GT	GGG
(GGC)	 AG	1002-1085	GT	AGG
(ATA)	 AG	3140-3193	GT	AGG
-recovered snap_scaffold_1031-snap.1-T1, internal, 287, 466
-recovered snap_scaffold_1031-snap.1-T1, internal, 1002, 1085
-recovered snap_scaffold_1031-snap.1-T1, internal, 3140, 3193
Couldn't classify 287, 483
Couldn't classify 3184, 3193
Sorry, prediction GeneMark_model.108783_t fails validation.
(ATC)	 AG	287-483	GT	GGG
(TGG)	 AG	507-518	GT	GGG
(GTG)	 AG	824-871	GT	GTG
(CCG)	 AG	1192-1206	GT	GGG
(GAC)	 AG	1354-1359	GT	GGG
(AGA)	 AG	1588-1593	GT	AGG
(GTT)	 AG	1620-1645	GT	AGG
(GGA)	 AG	1793-1799	GC	GGG
(GGC)	 AG	1829-1894	GT	GAG
(AGA)	 AG	1918-2290	GT	AAG
(AGA)	 AG	2326-2372	GT	AAG
(GAG)	 AG	2600-2644	GT	AGG
(GAA)	 AG	2672-2692	GT	AGG
(GAG)	 AG	2720-2734	GT	AGG
(GAA)	 AG	2762-2780	GT	AGG
(GAG)	 AG	2822-2975	GT	TGG
(GTG)	 AG	3150-3159	GT	AGG
(AGT)	 AG	3184-3193	GT	AGG
-recovered GeneMark_model.108783_t, internal, 287, 483
-recovered GeneMark_model.108783_t, internal, 507, 518
-recovered GeneMark_model.108783_t, internal, 824, 871
-recovered GeneMark_model.108783_t, internal, 1192, 1206
-recovered GeneMark_model.108783_t, internal, 1354, 1359
-recovered GeneMark_model.108783_t, internal, 1588, 1593
-recovered GeneMark_model.108783_t, internal, 1620, 1645
-recovered GeneMark_model.108783_t, internal, 1793, 1799
-recovered GeneMark_model.108783_t, internal, 1829, 1894
-recovered GeneMark_model.108783_t, internal, 1918, 2290
-recovered GeneMark_model.108783_t, internal, 2326, 2372
-recovered GeneMark_model.108783_t, internal, 2600, 2644
-recovered GeneMark_model.108783_t, internal, 2672, 2692
-recovered GeneMark_model.108783_t, internal, 2720, 2734
-recovered GeneMark_model.108783_t, internal, 2762, 2780
-recovered GeneMark_model.108783_t, internal, 2822, 2975
-recovered GeneMark_model.108783_t, internal, 3150, 3159
-recovered GeneMark_model.108783_t, internal, 3184, 3193

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3082, 3307
Sorry, prediction Augustus_model.g41490.t1 fails validation.
(ATG)	 CC	2616-2725	GT	AGG
(GGT)	 AG	3082-3307	GT	AGG
-recovered Augustus_model.g41490.t1, initial, 2616, 2725
-recovered Augustus_model.g41490.t1, internal, 3082, 3307
Valid prediction for GlimmerHMM_glimmerT_62416-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3523
-exon list size: 51


building trellis

1.9    
3.8    
5.7    
7.5    
9.4    
11.3    
13.2    
15.1    
17.0    
18.9    
20.8    
22.6    
24.5    
26.4    
28.3    
30.2    
32.1    
34.0    
35.8    
37.7    
39.6    
41.5    
43.4    
45.3    
47.2    
49.1    
50.9    
52.8    
54.7    
56.6    
58.5    
60.4    
62.3    
64.2    
66.0    
67.9    
69.8    
71.7    
73.6    
75.5    
77.4    
79.2    
81.1    
83.0    
84.9    
86.8    
88.7    
90.6    
92.5    
94.3    
96.2    
98.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support