-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_103

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g40770.t1
Valid prediction for snap_scaffold_103-snap.1-T1
Couldn't classify 6469, 6592
Couldn't classify 8611, 8710
Sorry, prediction pasa_asmbl_5189.p1 fails validation.
(GAT)	 TA	6469-6592	GT	AGG
(GCT)	 AG	6706-6806	GT	TTG
(ACC)	 AG	7017-7074	GT	AGG
(TGG)	 AG	7771-7854	GT	GGG
(GCA)	 AG	8256-8388	GT	AGG
(GTT)	 AG	8611-8710	GT	AGG
-recovered pasa_asmbl_5189.p1, terminal, 7017, 7074
-recovered pasa_asmbl_5189.p1, internal, 6706, 6806
-recovered pasa_asmbl_5189.p1, internal, 7017, 7074
-recovered pasa_asmbl_5189.p1, internal, 7771, 7854
-recovered pasa_asmbl_5189.p1, internal, 8256, 8388
-recovered pasa_asmbl_5189.p1, internal, 8611, 8710
Valid prediction for GeneMark_model.106564_t
Valid prediction for GlimmerHMM_glimmerT_61288-T1
Valid prediction for GeneMark_model.106565_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61289-T1
Valid prediction for snap_scaffold_103-snap.2-T1
Valid prediction for GeneMark_model.106563_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 15683
-exon list size: 33


building trellis

2.9    
5.7    
8.6    
11.4    
14.3    
17.1    
20.0    
22.9    
25.7    
28.6    
31.4    
34.3    
37.1    
40.0    
42.9    
45.7    
48.6    
51.4    
54.3    
57.1    
60.0    
62.9    
65.7    
68.6    
71.4    
74.3    
77.1    
80.0    
82.9    
85.7    
88.6    
91.4    
94.3    
97.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support