-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1027

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 44, 195
Couldn't classify 3026, 3117
Sorry, prediction snap_scaffold_1027-snap.1-T1 fails validation.
(CCT)	 AG	44-195	GT	TGG
(GAG)	 AG	2817-2906	GT	GGG
(GTG)	 AG	3026-3117	GT	AAG
-recovered snap_scaffold_1027-snap.1-T1, internal, 44, 195
-recovered snap_scaffold_1027-snap.1-T1, internal, 2817, 2906
-recovered snap_scaffold_1027-snap.1-T1, internal, 3026, 3117
Couldn't classify 44, 195
Sorry, prediction Augustus_model.g41488.t1 fails validation.
(CCT)	 AG	44-195	GT	TGG
(GAG)	 AG	2817-2906	GT	GGG
(GTG)	 AG	3026-3121	GA	AAG
-recovered Augustus_model.g41488.t1, terminal, 3026, 3121
-recovered Augustus_model.g41488.t1, internal, 44, 195
-recovered Augustus_model.g41488.t1, internal, 2817, 2906
Valid prediction for GeneMark_model.108777_t
add_exon() Sorry, GeneMark_model.108777_t 44-291-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_62412-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 389, 410
Sorry, prediction GeneMark_model.108778_t fails validation.
(CGC)	 AG	389-410	GT	GGG
(CAG)	 AG	618-729	CA	GAC
-recovered GeneMark_model.108778_t, terminal, 618, 729
-recovered GeneMark_model.108778_t, internal, 389, 410

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3541
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support