-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1025

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 731, 858
Sorry, prediction GeneMark_model.108775_t fails validation.
(CCT)	 AG	731-858	GT	CAG
(GGG)	 AG	2628-2636	GT	AGG
(GCG)	 AG	2658-2669	GT	GTG
(GGG)	 AG	2695-2785	AC	AGA
-recovered GeneMark_model.108775_t, terminal, 2695, 2785
-recovered GeneMark_model.108775_t, internal, 731, 858
-recovered GeneMark_model.108775_t, internal, 2628, 2636
-recovered GeneMark_model.108775_t, internal, 2658, 2669
Couldn't classify 727, 907
Sorry, prediction snap_scaffold_1025-snap.1-T1 fails validation.
(GCA)	 AG	727-907	GT	ATG
(AGC)	 AG	2868-3005	TT	AGT
-recovered snap_scaffold_1025-snap.1-T1, terminal, 2868, 3005
-recovered snap_scaffold_1025-snap.1-T1, internal, 727, 907

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 102, 198
Sorry, prediction GlimmerHMM_glimmerT_62411-T1 fails validation.
(TAC)	 AG	102-198	GT	GGG
(GTG)	 AG	437-687	GT	TGG
(ATG)	 AG	2632-2832	TT	AGT
-recovered GlimmerHMM_glimmerT_62411-T1, terminal, 2632, 2832
-recovered GlimmerHMM_glimmerT_62411-T1, internal, 102, 198
-recovered GlimmerHMM_glimmerT_62411-T1, internal, 437, 687
Couldn't classify 66, 198
Couldn't classify 2632, 2808
Sorry, prediction snap_scaffold_1025-snap.2-T1 fails validation.
(ATA)	 AG	66-198	GT	GGG
(GTG)	 AG	437-687	GT	TGG
(ATG)	 AG	2632-2808	GT	TGG
-recovered snap_scaffold_1025-snap.2-T1, initial, 2632, 2808
-recovered snap_scaffold_1025-snap.2-T1, internal, 66, 198
-recovered snap_scaffold_1025-snap.2-T1, internal, 437, 687
-recovered snap_scaffold_1025-snap.2-T1, internal, 2632, 2808
Couldn't classify 66, 198
Sorry, prediction GeneMark_model.108776_t fails validation.
(ATA)	 AG	66-198	GT	GGG
(GTG)	 AG	437-717	AA	AGA
-recovered GeneMark_model.108776_t, terminal, 437, 717
-recovered GeneMark_model.108776_t, internal, 66, 198
Couldn't classify 102, 198
Sorry, prediction Augustus_model.g41486.t1 fails validation.
(TAC)	 AG	102-198	GT	GGG
(GTG)	 AG	437-687	GT	TGG
(ATG)	 AG	2632-2832	TT	AGT
-recovered Augustus_model.g41486.t1, terminal, 2632, 2832
-recovered Augustus_model.g41486.t1, internal, 102, 198
-recovered Augustus_model.g41486.t1, internal, 437, 687

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3005, rend_intergenic: 737  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3544
-exon list size: 23


building trellis

4.0    
8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3005, rend_intergenic: 737  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support