-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1024

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2517, 2529
Sorry, prediction GeneMark_model.108774_t fails validation.
(ATG)	 GG	556-602	GT	AGG
(GAG)	 AG	625-720	GT	AAG
(GGG)	 AG	751-798	GT	GGG
(GAG)	 AG	822-878	GT	ATG
(GCT)	 AG	1535-1540	GT	CAG
(GCT)	 AG	1659-1664	GT	CAG
(GCT)	 AG	1783-1788	GT	CAG
(AGA)	 AG	2517-2529	GT	GGG
-recovered GeneMark_model.108774_t, initial, 556, 602
-recovered GeneMark_model.108774_t, internal, 625, 720
-recovered GeneMark_model.108774_t, internal, 751, 798
-recovered GeneMark_model.108774_t, internal, 822, 878
-recovered GeneMark_model.108774_t, internal, 1535, 1540
-recovered GeneMark_model.108774_t, internal, 1659, 1664
-recovered GeneMark_model.108774_t, internal, 1783, 1788
-recovered GeneMark_model.108774_t, internal, 2517, 2529
Valid prediction for snap_scaffold_1024-snap.1-T1
add_exon() Sorry, snap_scaffold_1024-snap.1-T1 449-665-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3546
-exon list size: 18


building trellis

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-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support