-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1023

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2709, 2873
Sorry, prediction snap_scaffold_1023-snap.1-T1 fails validation.
(ATG)	 TT	289-387	GT	TGG
(CTA)	 AG	2709-2873	GT	TAG
-recovered snap_scaffold_1023-snap.1-T1, initial, 289, 387
-recovered snap_scaffold_1023-snap.1-T1, internal, 2709, 2873

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 390, 452
Sorry, prediction GeneMark_model.108773_t fails validation.
(AGA)	 AG	390-452	GT	GGG
(GGA)	 AG	2827-2965	GA	GAG
-recovered GeneMark_model.108773_t, terminal, 2827, 2965
-recovered GeneMark_model.108773_t, internal, 390, 452

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3546
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support