-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1020

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 566, 1042
Sorry, prediction snap_scaffold_1020-snap.1-T1 fails validation.
(GAG)	 AG	566-1042	GT	TTG
-recovered snap_scaffold_1020-snap.1-T1, internal, 566, 1042
Couldn't classify 555, 659
Couldn't classify 3481, 3530
Sorry, prediction GeneMark_model.108771_t fails validation.
(AGA)	 AG	555-659	GC	AGG
(GTG)	 AG	685-759	GT	AGG
(GCG)	 AG	785-1042	GT	TTG
(AGA)	 AG	2771-3379	GT	GAG
(GGG)	 AG	3412-3417	GT	GGG
(AGG)	 AG	3481-3530	GT	CAG
-recovered GeneMark_model.108771_t, internal, 555, 659
-recovered GeneMark_model.108771_t, internal, 685, 759
-recovered GeneMark_model.108771_t, internal, 785, 1042
-recovered GeneMark_model.108771_t, internal, 2771, 3379
-recovered GeneMark_model.108771_t, internal, 3412, 3417
-recovered GeneMark_model.108771_t, internal, 3481, 3530

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3553
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support