-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_102 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106558_t Valid prediction for GeneMark_model.106561_t Couldn't classify 1290, 1400 Couldn't classify 13244, 13438 Sorry, prediction snap_scaffold_102-snap.2-T1 fails validation. (GAC) AG 1290-1400 GT GGG (AGA) AG 2023-2385 GT AGG (GTG) AG 3115-3228 GT GGG (GAG) AG 5773-5840 GT AGG (TTG) AG 6622-6732 GT AGG (GAA) AG 11359-11613 GT GGG (CCA) AG 13244-13438 GT AGG -recovered snap_scaffold_102-snap.2-T1, internal, 1290, 1400 -recovered snap_scaffold_102-snap.2-T1, internal, 2023, 2385 -recovered snap_scaffold_102-snap.2-T1, internal, 3115, 3228 -recovered snap_scaffold_102-snap.2-T1, internal, 5773, 5840 -recovered snap_scaffold_102-snap.2-T1, internal, 6622, 6732 -recovered snap_scaffold_102-snap.2-T1, internal, 11359, 11613 -recovered snap_scaffold_102-snap.2-T1, internal, 13244, 13438 Couldn't classify 97, 345 Sorry, prediction GeneMark_model.106557_t fails validation. (ACA) AG 97-345 GT GCG (GGT) AG 394-409 GC GAG -recovered GeneMark_model.106557_t, terminal, 394, 409 -recovered GeneMark_model.106557_t, internal, 97, 345 -recovered GeneMark_model.106557_t, internal, 394, 409 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.106560_t Valid prediction for GeneMark_model.106559_t Valid prediction for GeneMark_model.106562_t Couldn't classify 14876, 14996 Sorry, prediction Augustus_model.g40769.t1 fails validation. (ATG) CG 3090-3198 GT CTG (ATA) AG 4457-4585 GT CGG (GAG) AG 6038-6111 GT AAG (ACC) AG 7035-7223 GT AGG (ATG) AG 8120-8347 GT TGG (ATC) AG 8764-8884 GT AAG (AAT) AG 9058-9246 GT GGG (CCT) AG 9898-10077 GT GCG (CGT) AG 11129-11244 GT TGG (CCA) AG 11618-11697 GT AGG (GTG) AG 12073-12229 GT CGG (GGC) AG 12641-12781 GT CGG (CCT) AG 13362-13509 GT CCG (AGA) AG 14079-14193 GT AGG (GTA) AG 14876-14996 GT CGG -recovered Augustus_model.g40769.t1, initial, 3090, 3198 -recovered Augustus_model.g40769.t1, initial, 8120, 8347 -recovered Augustus_model.g40769.t1, internal, 4457, 4585 -recovered Augustus_model.g40769.t1, internal, 6038, 6111 -recovered Augustus_model.g40769.t1, internal, 7035, 7223 -recovered Augustus_model.g40769.t1, internal, 8120, 8347 -recovered Augustus_model.g40769.t1, internal, 8764, 8884 -recovered Augustus_model.g40769.t1, internal, 9058, 9246 -recovered Augustus_model.g40769.t1, internal, 9898, 10077 -recovered Augustus_model.g40769.t1, internal, 11129, 11244 -recovered Augustus_model.g40769.t1, internal, 11618, 11697 -recovered Augustus_model.g40769.t1, internal, 12073, 12229 -recovered Augustus_model.g40769.t1, internal, 12641, 12781 -recovered Augustus_model.g40769.t1, internal, 13362, 13509 -recovered Augustus_model.g40769.t1, internal, 14079, 14193 -recovered Augustus_model.g40769.t1, internal, 14876, 14996 Valid prediction for GlimmerHMM_glimmerT_61287-T1 Couldn't classify 4450, 4585 Couldn't classify 14876, 14996 Sorry, prediction snap_scaffold_102-snap.1-T1 fails validation. (GAG) AG 4450-4585 GT CGG (GAG) AG 6038-6111 GT AAG (ACC) AG 7035-7223 GT AGG (ATG) AG 8120-8347 GT TGG (ATC) AG 8764-8884 GT AAG (AAT) AG 9058-9246 GT GGG (CCT) AG 9898-10077 GT GCG (CGT) AG 11129-11244 GT TGG (CCA) AG 11618-11697 GT AGG (GTG) AG 12073-12229 GT CGG (GGC) AG 12641-12781 GT CGG (CCT) AG 13362-13509 GT CCG (AGA) AG 14079-14163 GT CTG (GTA) AG 14876-14996 GT CGG -recovered snap_scaffold_102-snap.1-T1, initial, 8120, 8347 -recovered snap_scaffold_102-snap.1-T1, internal, 4450, 4585 -recovered snap_scaffold_102-snap.1-T1, internal, 6038, 6111 -recovered snap_scaffold_102-snap.1-T1, internal, 7035, 7223 -recovered snap_scaffold_102-snap.1-T1, internal, 8120, 8347 -recovered snap_scaffold_102-snap.1-T1, internal, 8764, 8884 -recovered snap_scaffold_102-snap.1-T1, internal, 9058, 9246 -recovered snap_scaffold_102-snap.1-T1, internal, 9898, 10077 -recovered snap_scaffold_102-snap.1-T1, internal, 11129, 11244 -recovered snap_scaffold_102-snap.1-T1, internal, 11618, 11697 -recovered snap_scaffold_102-snap.1-T1, internal, 12073, 12229 -recovered snap_scaffold_102-snap.1-T1, internal, 12641, 12781 -recovered snap_scaffold_102-snap.1-T1, internal, 13362, 13509 -recovered snap_scaffold_102-snap.1-T1, internal, 14079, 14163 -recovered snap_scaffold_102-snap.1-T1, internal, 14876, 14996 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11347, rend_intergenic: 1290 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 15796 -exon list size: 91 building trellis 1.1 2.2 3.2 4.3 5.4 6.5 7.5 8.6 9.7 10.8 11.8 12.9 14.0 15.1 16.1 17.2 18.3 19.4 20.4 21.5 22.6 23.7 24.7 25.8 26.9 28.0 29.0 30.1 31.2 32.3 33.3 34.4 35.5 36.6 37.6 38.7 39.8 40.9 41.9 43.0 44.1 45.2 46.2 47.3 48.4 49.5 50.5 51.6 52.7 53.8 54.8 55.9 57.0 58.1 59.1 60.2 61.3 62.4 63.4 64.5 65.6 66.7 67.7 68.8 69.9 71.0 72.0 73.1 74.2 75.3 76.3 77.4 78.5 79.6 80.6 81.7 82.8 83.9 84.9 86.0 87.1 88.2 89.2 90.3 91.4 92.5 93.5 94.6 95.7 96.8 97.8 98.9 -found 1 predictions from path traversal Error with prediction: snap lend_intergenic: 11347, rend_intergenic: 1290 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 1 predictions persist after filtering for low support