-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1017

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2250, 2291
Sorry, prediction GeneMark_model.108768_t fails validation.
(AAG)	 AG	2250-2291	GT	GAG
(AAG)	 AG	2343-2465	GC	CAG
(AGG)	 AG	2496-2838	AG	AGA
-recovered GeneMark_model.108768_t, terminal, 2496, 2838
-recovered GeneMark_model.108768_t, internal, 2250, 2291
-recovered GeneMark_model.108768_t, internal, 2343, 2465
Couldn't classify 3285, 3411
Sorry, prediction GeneMark_model.108767_t fails validation.
(ATG)	 AG	2896-2972	GT	AAG
(AGA)	 AG	2997-3089	GT	CAG
(GAG)	 AG	3176-3262	GT	GAG
(GAG)	 AG	3285-3411	GT	ATG
-recovered GeneMark_model.108767_t, initial, 2896, 2972
-recovered GeneMark_model.108767_t, internal, 2896, 2972
-recovered GeneMark_model.108767_t, internal, 2997, 3089
-recovered GeneMark_model.108767_t, internal, 3176, 3262
-recovered GeneMark_model.108767_t, internal, 3285, 3411
Couldn't classify 3043, 3411
Sorry, prediction snap_scaffold_1017-snap.1-T1 fails validation.
(AAC)	 AG	3043-3411	GT	ATG
-recovered snap_scaffold_1017-snap.1-T1, internal, 3043, 3411

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3575
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support