-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1016

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 593, 816
Couldn't classify 2178, 2289
Sorry, prediction Augustus_model.g41484.t1 fails validation.
(CAG)	 AG	593-816	GT	AAG
(GAA)	 AG	2178-2289	GT	CAG
-recovered Augustus_model.g41484.t1, internal, 593, 816
-recovered Augustus_model.g41484.t1, internal, 2178, 2289
Valid prediction for GeneMark_model.108765_t
Couldn't classify 596, 816
Couldn't classify 2178, 2344
Sorry, prediction snap_scaffold_1016-snap.1-T1 fails validation.
(GGT)	 AG	596-816	GT	AAG
(GAA)	 AG	2178-2344	GT	GGG
-recovered snap_scaffold_1016-snap.1-T1, internal, 596, 816
-recovered snap_scaffold_1016-snap.1-T1, internal, 2178, 2344
Valid prediction for GlimmerHMM_glimmerT_62409-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3546, 3553
Sorry, prediction GeneMark_model.108764_t fails validation.
(ATG)	 TG	1868-1906	GT	AGG
(TGG)	 AG	2457-2485	GT	CAG
(GAC)	 AG	2526-2630	GC	GAG
(CGT)	 AG	2652-2678	GT	GTG
(AGA)	 AG	2704-2868	GT	CGG
(CGG)	 AG	2913-3086	GT	CTG
(AAA)	 AG	3546-3553	GC	AGG
-recovered GeneMark_model.108764_t, initial, 1868, 1906
-recovered GeneMark_model.108764_t, internal, 2457, 2485
-recovered GeneMark_model.108764_t, internal, 2526, 2630
-recovered GeneMark_model.108764_t, internal, 2652, 2678
-recovered GeneMark_model.108764_t, internal, 2704, 2868
-recovered GeneMark_model.108764_t, internal, 2913, 3086
-recovered GeneMark_model.108764_t, internal, 3546, 3553
Valid prediction for GeneMark_model.108766_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3580
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support