-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1013

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 131, 174
Couldn't classify 3332, 3405
Sorry, prediction snap_scaffold_1013-snap.1-T1 fails validation.
(GAA)	 AG	131-174	GT	AGG
(AAC)	 AG	197-297	GT	AGG
(ATT)	 AG	1031-1084	GT	AAG
(GTT)	 AG	3332-3405	GT	ATG
-recovered snap_scaffold_1013-snap.1-T1, internal, 131, 174
-recovered snap_scaffold_1013-snap.1-T1, internal, 197, 297
-recovered snap_scaffold_1013-snap.1-T1, internal, 1031, 1084
-recovered snap_scaffold_1013-snap.1-T1, internal, 3332, 3405

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 212, 262
Couldn't classify 2525, 2563
Sorry, prediction snap_scaffold_1013-snap.2-T1 fails validation.
(ATA)	 AG	212-262	GT	TGG
(GTT)	 AG	704-755	GT	TGG
(GTT)	 AG	1056-1077	GT	ATG
(ATA)	 AG	1313-1364	GT	TGG
(GTA)	 AG	2525-2563	GT	TGG
-recovered snap_scaffold_1013-snap.2-T1, internal, 212, 262
-recovered snap_scaffold_1013-snap.2-T1, internal, 704, 755
-recovered snap_scaffold_1013-snap.2-T1, internal, 1056, 1077
-recovered snap_scaffold_1013-snap.2-T1, internal, 1313, 1364
-recovered snap_scaffold_1013-snap.2-T1, internal, 2525, 2563

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3405, rend_intergenic: 1028  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3590
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3405, rend_intergenic: 1028  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support