-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1012

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62407-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62407-T1 3143-3297-terminal-1 is invalid.
Couldn't classify 3412, 3535
Sorry, prediction GeneMark_model.108758_t fails validation.
(ATG)	 CC	1188-1206	GT	AAG
(ATA)	 AG	3143-3293	GT	CGG
(TCG)	 AG	3412-3535	GT	CAG
-recovered GeneMark_model.108758_t, initial, 1188, 1206
-recovered GeneMark_model.108758_t, internal, 3143, 3293
-recovered GeneMark_model.108758_t, internal, 3412, 3535
Couldn't classify 3412, 3535
Sorry, prediction snap_scaffold_1012-snap.1-T1 fails validation.
(ATG)	 CC	1188-1206	GT	AAG
(ATA)	 AG	3143-3293	GT	CGG
(TCG)	 AG	3412-3535	GT	CAG
-recovered snap_scaffold_1012-snap.1-T1, initial, 1188, 1206
-recovered snap_scaffold_1012-snap.1-T1, internal, 3143, 3293
-recovered snap_scaffold_1012-snap.1-T1, internal, 3412, 3535
Couldn't classify 3412, 3494
Sorry, prediction Augustus_model.g41482.t1 fails validation.
(ATG)	 TT	592-634	GT	AGG
(ATA)	 AG	3143-3293	GT	CGG
(TCG)	 AG	3412-3494	GT	ATG
-recovered Augustus_model.g41482.t1, initial, 592, 634
-recovered Augustus_model.g41482.t1, internal, 3143, 3293
-recovered Augustus_model.g41482.t1, internal, 3412, 3494

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3591
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support