-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1011

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 176, 276
Couldn't classify 3067, 3237
Sorry, prediction snap_scaffold_1011-snap.1-T1 fails validation.
(AGC)	 AG	176-276	GT	TCG
(ATG)	 AG	893-984	GT	GGG
(GCC)	 AG	3067-3237	GT	ACG
-recovered snap_scaffold_1011-snap.1-T1, initial, 893, 984
-recovered snap_scaffold_1011-snap.1-T1, internal, 176, 276
-recovered snap_scaffold_1011-snap.1-T1, internal, 893, 984
-recovered snap_scaffold_1011-snap.1-T1, internal, 3067, 3237
Valid prediction for Augustus_model.g41481.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108756_t
Couldn't classify 467, 549
Sorry, prediction GeneMark_model.108757_t fails validation.
(GTC)	 AG	467-549	GT	GAG
(AGA)	 AG	579-617	GT	GGG
(ACA)	 AG	644-670	GT	GAG
(ACT)	 AG	701-724	GT	GGG
(TGG)	 AG	757-791	GT	ATG
(CCG)	 AG	919-1037	TA	GAT
-recovered GeneMark_model.108757_t, terminal, 644, 670
-recovered GeneMark_model.108757_t, terminal, 919, 1037
-recovered GeneMark_model.108757_t, internal, 467, 549
-recovered GeneMark_model.108757_t, internal, 579, 617
-recovered GeneMark_model.108757_t, internal, 644, 670
-recovered GeneMark_model.108757_t, internal, 701, 724
-recovered GeneMark_model.108757_t, internal, 757, 791
Couldn't classify 2002, 2182
Sorry, prediction GlimmerHMM_glimmerT_62406-T1 fails validation.
(AGG)	 AG	2002-2182	GT	TGG
(GAA)	 AG	2946-2999	AT	AGA
-recovered GlimmerHMM_glimmerT_62406-T1, terminal, 2946, 2999
-recovered GlimmerHMM_glimmerT_62406-T1, internal, 2002, 2182

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3599
-exon list size: 35


building trellis

2.7    
5.4    
8.1    
10.8    
13.5    
16.2    
18.9    
21.6    
24.3    
27.0    
29.7    
32.4    
35.1    
37.8    
40.5    
43.2    
45.9    
48.6    
51.4    
54.1    
56.8    
59.5    
62.2    
64.9    
67.6    
70.3    
73.0    
75.7    
78.4    
81.1    
83.8    
86.5    
89.2    
91.9    
94.6    
97.3    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support