-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1010

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 532, 634
Couldn't classify 3325, 3331
Sorry, prediction GeneMark_model.108755_t fails validation.
(AAA)	 AG	532-634	GC	GAG
(AGA)	 AG	662-744	GC	GAG
(ACA)	 AG	770-790	GC	GAG
(ACA)	 AG	814-990	GC	GAG
(ACA)	 AG	1012-1137	GC	AGG
(ACA)	 AG	1262-1291	GC	AGG
(ACA)	 AG	1324-1353	GT	ATG
(AGA)	 AG	2352-2495	GT	ATG
(AGA)	 AG	3325-3331	GT	ATG
-recovered GeneMark_model.108755_t, internal, 532, 634
-recovered GeneMark_model.108755_t, internal, 662, 744
-recovered GeneMark_model.108755_t, internal, 770, 790
-recovered GeneMark_model.108755_t, internal, 814, 990
-recovered GeneMark_model.108755_t, internal, 1012, 1137
-recovered GeneMark_model.108755_t, internal, 1262, 1291
-recovered GeneMark_model.108755_t, internal, 1324, 1353
-recovered GeneMark_model.108755_t, internal, 2352, 2495
-recovered GeneMark_model.108755_t, internal, 3325, 3331

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3602
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support