-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1008

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1228, 1357
Couldn't classify 1721, 1845
Sorry, prediction snap_scaffold_1008-snap.1-T1 fails validation.
(CGA)	 AG	1228-1357	GT	AGG
(GGG)	 AG	1721-1845	GT	GGG
-recovered snap_scaffold_1008-snap.1-T1, internal, 1228, 1357
-recovered snap_scaffold_1008-snap.1-T1, internal, 1721, 1845
Couldn't classify 1228, 1338
Sorry, prediction Augustus_model.g41480.t1 fails validation.
(CGA)	 AG	1228-1338	GT	AGG
(ACA)	 AG	1560-1673	TC	AAT
-recovered Augustus_model.g41480.t1, terminal, 1560, 1673
-recovered Augustus_model.g41480.t1, internal, 1228, 1338
Valid prediction for GeneMark_model.108753_t
add_exon() Sorry, GeneMark_model.108753_t 42-372-terminal-1 is invalid.
Valid prediction for GeneMark_model.108754_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3610
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support