-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1007

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 426, 489
Sorry, prediction GeneMark_model.108751_t fails validation.
(TTG)	 AG	426-489	GT	CAG
(GGG)	 AG	511-675	GT	GGG
(GAT)	 AG	708-761	GT	GGG
(GAG)	 AG	785-886	GT	AAG
(GAG)	 AG	939-1112	GT	AGG
(ATT)	 AG	1168-1242	GT	GAG
(AGA)	 AG	1267-1305	GC	GAG
(AGA)	 AG	1329-1430	GC	GGG
(GGA)	 AG	1460-1528	GT	GTG
(AGC)	 AG	1562-1618	GT	AGG
(AGA)	 AG	1643-1736	GC	AGG
-recovered GeneMark_model.108751_t, terminal, 1643, 1736
-recovered GeneMark_model.108751_t, internal, 426, 489
-recovered GeneMark_model.108751_t, internal, 511, 675
-recovered GeneMark_model.108751_t, internal, 708, 761
-recovered GeneMark_model.108751_t, internal, 785, 886
-recovered GeneMark_model.108751_t, internal, 939, 1112
-recovered GeneMark_model.108751_t, internal, 1168, 1242
-recovered GeneMark_model.108751_t, internal, 1267, 1305
-recovered GeneMark_model.108751_t, internal, 1329, 1430
-recovered GeneMark_model.108751_t, internal, 1460, 1528
-recovered GeneMark_model.108751_t, internal, 1562, 1618
-recovered GeneMark_model.108751_t, internal, 1643, 1736

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 686, 721
Sorry, prediction GeneMark_model.108752_t fails validation.
(GAG)	 AG	686-721	GT	GGG
(GGG)	 AG	755-805	GC	AGG
(AGG)	 AG	832-1062	GT	GGG
(AGA)	 AG	1097-1253	GG	AGG
-recovered GeneMark_model.108752_t, terminal, 1097, 1253
-recovered GeneMark_model.108752_t, internal, 686, 721
-recovered GeneMark_model.108752_t, internal, 755, 805
-recovered GeneMark_model.108752_t, internal, 832, 1062
Valid prediction for snap_scaffold_1007-snap.1-T1
add_exon() Sorry, snap_scaffold_1007-snap.1-T1 527-1008-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3613
-exon list size: 29


building trellis

3.2    
6.5    
9.7    
12.9    
16.1    
19.4    
22.6    
25.8    
29.0    
32.3    
35.5    
38.7    
41.9    
45.2    
48.4    
51.6    
54.8    
58.1    
61.3    
64.5    
67.7    
71.0    
74.2    
77.4    
80.6    
83.9    
87.1    
90.3    
93.5    
96.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support