-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1006

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3045, 3176
Couldn't classify 3476, 3601
Sorry, prediction snap_scaffold_1006-snap.1-T1 fails validation.
(CCT)	 AG	3045-3176	GT	ACG
(GCC)	 AG	3476-3601	GT	ACG
-recovered snap_scaffold_1006-snap.1-T1, internal, 3045, 3176
-recovered snap_scaffold_1006-snap.1-T1, internal, 3476, 3601
Couldn't classify 35, 265
Couldn't classify 3303, 3319
Sorry, prediction GeneMark_model.108750_t fails validation.
(GAG)	 AG	35-265	GT	CAG
(GGA)	 AG	448-510	GT	AGG
(AGG)	 AG	605-823	GT	GAG
(GTG)	 AG	849-857	GT	CAG
(GGA)	 AG	1067-1129	GT	GGG
(AGC)	 AG	1151-1233	GC	CAG
(CCT)	 AG	3303-3319	GT	GGG
-recovered GeneMark_model.108750_t, internal, 35, 265
-recovered GeneMark_model.108750_t, internal, 448, 510
-recovered GeneMark_model.108750_t, internal, 605, 823
-recovered GeneMark_model.108750_t, internal, 849, 857
-recovered GeneMark_model.108750_t, internal, 1067, 1129
-recovered GeneMark_model.108750_t, internal, 1151, 1233
-recovered GeneMark_model.108750_t, internal, 3303, 3319

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3614
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support