-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1005

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1005-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_62405-T1
Valid prediction for GlimmerHMM_glimmerT_62404-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62404-T1 1459-1649-terminal-1 is invalid.
Valid prediction for GeneMark_model.108749_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108748_t
Couldn't classify 307, 447
Sorry, prediction snap_scaffold_1005-snap.2-T1 fails validation.
(TGC)	 AG	307-447	GT	TGG
(GAG)	 AG	1186-1518	GA	GAG
-recovered snap_scaffold_1005-snap.2-T1, terminal, 1186, 1518
-recovered snap_scaffold_1005-snap.2-T1, internal, 307, 447

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3362, rend_intergenic: 2097  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3614
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3362, rend_intergenic: 2097  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support