-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1002

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 113, 222
Couldn't classify 2247, 2723
Sorry, prediction snap_scaffold_1002-snap.1-T1 fails validation.
(TCA)	 AG	113-222	GT	TGG
(GTG)	 AG	2247-2723	GT	CGG
-recovered snap_scaffold_1002-snap.1-T1, internal, 113, 222
-recovered snap_scaffold_1002-snap.1-T1, internal, 2247, 2723
Couldn't classify 32, 52
Couldn't classify 2617, 2705
Sorry, prediction GeneMark_model.108745_t fails validation.
(ACA)	 AG	32-52	GT	GTG
(GCC)	 AG	2196-2246	GT	AGG
(GCC)	 AG	2269-2361	GT	AGG
(GCC)	 AG	2391-2547	GT	AGG
(GTG)	 AG	2571-2584	GT	GAG
(TGT)	 AG	2617-2705	GT	CGG
-recovered GeneMark_model.108745_t, internal, 32, 52
-recovered GeneMark_model.108745_t, internal, 2196, 2246
-recovered GeneMark_model.108745_t, internal, 2269, 2361
-recovered GeneMark_model.108745_t, internal, 2391, 2547
-recovered GeneMark_model.108745_t, internal, 2571, 2584
-recovered GeneMark_model.108745_t, internal, 2617, 2705
Valid prediction for GlimmerHMM_glimmerT_62401-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62401-T1 2247-2800-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3621
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support