-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1001

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108744_t
Valid prediction for GlimmerHMM_glimmerT_62400-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 671, 763
Sorry, prediction snap_scaffold_1001-snap.1-T1 fails validation.
(GTC)	 AG	671-763	GT	CGG
(GCC)	 AG	1969-2092	GT	CAG
(TGA)	 AG	3045-3162	CA	AAC
-recovered snap_scaffold_1001-snap.1-T1, terminal, 3045, 3162
-recovered snap_scaffold_1001-snap.1-T1, internal, 671, 763
-recovered snap_scaffold_1001-snap.1-T1, internal, 1969, 2092

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3627
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support