-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1000

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 81, 1932
Couldn't classify 3064, 3356
Sorry, prediction snap_scaffold_1000-snap.2-T1 fails validation.
(TTC)	 AG	81-1932	GT	AGG
(GAG)	 AG	2501-2616	GT	AGG
(ACG)	 AG	3064-3356	GT	GGG
-recovered snap_scaffold_1000-snap.2-T1, internal, 81, 1932
-recovered snap_scaffold_1000-snap.2-T1, internal, 2501, 2616
-recovered snap_scaffold_1000-snap.2-T1, internal, 3064, 3356
Couldn't classify 3064, 3356
Sorry, prediction GlimmerHMM_glimmerT_62399-T1 fails validation.
(ATG)	 GG	226-1932	GT	AGG
(GAG)	 AG	2501-2616	GT	AGG
(ACG)	 AG	3064-3356	GT	GGG
-recovered GlimmerHMM_glimmerT_62399-T1, initial, 226, 1932
-recovered GlimmerHMM_glimmerT_62399-T1, internal, 2501, 2616
-recovered GlimmerHMM_glimmerT_62399-T1, internal, 3064, 3356
Couldn't classify 48, 1932
Couldn't classify 3064, 3356
Sorry, prediction GeneMark_model.108743_t fails validation.
(AAG)	 AG	48-1932	GT	AGG
(GAG)	 AG	2501-2616	GT	AGG
(ACG)	 AG	3064-3356	GT	GGG
-recovered GeneMark_model.108743_t, internal, 48, 1932
-recovered GeneMark_model.108743_t, internal, 2501, 2616
-recovered GeneMark_model.108743_t, internal, 3064, 3356
Couldn't classify 81, 1932
Couldn't classify 3064, 3356
Sorry, prediction Augustus_model.g41478.t1 fails validation.
(TTC)	 AG	81-1932	GT	AGG
(GAG)	 AG	2501-2616	GT	AGG
(ACG)	 AG	3064-3356	GT	GGG
-recovered Augustus_model.g41478.t1, internal, 81, 1932
-recovered Augustus_model.g41478.t1, internal, 2501, 2616
-recovered Augustus_model.g41478.t1, internal, 3064, 3356

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3190, 3566
Sorry, prediction snap_scaffold_1000-snap.1-T1 fails validation.
(ATG)	 CC	411-611	GT	AGG
(GCA)	 AG	2047-2235	GT	CGG
(GGG)	 AG	2289-2382	GT	CGG
(GGG)	 AG	2456-2740	GT	GGG
(TTC)	 AG	2930-3087	GT	GGG
(ATT)	 AG	3190-3566	GT	CGG
-recovered snap_scaffold_1000-snap.1-T1, initial, 411, 611
-recovered snap_scaffold_1000-snap.1-T1, internal, 2047, 2235
-recovered snap_scaffold_1000-snap.1-T1, internal, 2289, 2382
-recovered snap_scaffold_1000-snap.1-T1, internal, 2456, 2740
-recovered snap_scaffold_1000-snap.1-T1, internal, 2930, 3087
-recovered snap_scaffold_1000-snap.1-T1, internal, 3190, 3566

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3219, rend_intergenic: 81  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3629
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3219, rend_intergenic: 81  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support