-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_100

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 11277, 11406
Sorry, prediction snap_scaffold_100-snap.3-T1 fails validation.
(ATG)	 TG	9770-10131	GT	AGG
(TGA)	 AG	10829-10848	GT	GGG
(AAG)	 AG	11277-11406	GT	AGG
-recovered snap_scaffold_100-snap.3-T1, initial, 9770, 10131
-recovered snap_scaffold_100-snap.3-T1, internal, 10829, 10848
-recovered snap_scaffold_100-snap.3-T1, internal, 11277, 11406
Valid prediction for GeneMark_model.106550_t
Couldn't classify 1411, 1498
Sorry, prediction snap_scaffold_100-snap.1-T1 fails validation.
(ATC)	 AG	1411-1498	GT	GGG
(GGG)	 AG	9565-9724	GT	GAG
-recovered snap_scaffold_100-snap.1-T1, terminal, 9565, 9724
-recovered snap_scaffold_100-snap.1-T1, internal, 1411, 1498
-recovered snap_scaffold_100-snap.1-T1, internal, 9565, 9724
Valid prediction for GlimmerHMM_glimmerT_61282-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_100-snap.2-T1
Couldn't classify 14938, 14947
Sorry, prediction GeneMark_model.106548_t fails validation.
(ATG)	 GG	13648-13667	GT	CGG
(AGC)	 AG	14778-14795	GT	AGG
(ACA)	 AG	14836-14907	GT	AGG
(ACA)	 AG	14938-14947	GT	AGG
-recovered GeneMark_model.106548_t, initial, 13648, 13667
-recovered GeneMark_model.106548_t, internal, 14778, 14795
-recovered GeneMark_model.106548_t, internal, 14836, 14907
-recovered GeneMark_model.106548_t, internal, 14938, 14947
Valid prediction for GeneMark_model.106551_t
Valid prediction for snap_scaffold_100-snap.4-T1
add_exon() Sorry, snap_scaffold_100-snap.4-T1 306-558-terminal-1 is invalid.
Valid prediction for GeneMark_model.106549_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9724, rend_intergenic: 6033  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14823, rend_intergenic: 9770  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 15886
-exon list size: 52


building trellis

1.9    
3.7    
5.6    
7.4    
9.3    
11.1    
13.0    
14.8    
16.7    
18.5    
20.4    
22.2    
24.1    
25.9    
27.8    
29.6    
31.5    
33.3    
35.2    
37.0    
38.9    
40.7    
42.6    
44.4    
46.3    
48.1    
50.0    
51.9    
53.7    
55.6    
57.4    
59.3    
61.1    
63.0    
64.8    
66.7    
68.5    
70.4    
72.2    
74.1    
75.9    
77.8    
79.6    
81.5    
83.3    
85.2    
87.0    
88.9    
90.7    
92.6    
94.4    
96.3    
98.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 9724, rend_intergenic: 6033  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14823, rend_intergenic: 9770  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support