-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_10/scaffold_10_8663606-9057672 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g17190.t1 Valid prediction for GeneMark_model.43837_t Valid prediction for snap_scaffold_10-snap.1711-T1 Valid prediction for GeneMark_model.43805_t Valid prediction for GlimmerHMM_glimmerT_25622-T1 Valid prediction for snap_scaffold_10-snap.1734-T1 Valid prediction for GeneMark_model.43834_t Valid prediction for GeneMark_model.43818_t Valid prediction for HiQ_model.g17211.t1 Valid prediction for HiQ_model.g17221.t1 Valid prediction for Augustus_model.g17213.t1 Valid prediction for snap_scaffold_10-snap.1736-T1 Valid prediction for GeneMark_model.43819_t Valid prediction for pasa_asmbl_4629.p1 Valid prediction for GeneMark_model.43793_t Valid prediction for snap_scaffold_10-snap.1725-T1 Valid prediction for GlimmerHMM_glimmerT_25625-T1 Valid prediction for snap_scaffold_10-snap.1693-T1 Valid prediction for snap_scaffold_10-snap.1713-T1 Valid prediction for pasa_asmbl_4617.p1 Valid prediction for GlimmerHMM_glimmerT_25654-T1 Valid prediction for GeneMark_model.43790_t Valid prediction for GeneMark_model.43767_t Valid prediction for GeneMark_model.43772_t Valid prediction for GeneMark_model.43762_t Valid prediction for GlimmerHMM_glimmerT_25629-T1 Valid prediction for GlimmerHMM_glimmerT_25650-T1 Valid prediction for snap_scaffold_10-snap.1743-T1 Valid prediction for GlimmerHMM_glimmerT_25656-T1 Valid prediction for GeneMark_model.43788_t Valid prediction for snap_scaffold_10-snap.1710-T1 Valid prediction for GeneMark_model.43808_t Valid prediction for CodingQuarry_transcript_5498-T1 Valid prediction for GlimmerHMM_glimmerT_25649-T1 Valid prediction for snap_scaffold_10-snap.1747-T1 Valid prediction for snap_scaffold_10-snap.1705-T1 Valid prediction for GeneMark_model.43764_t Valid prediction for GlimmerHMM_glimmerT_25635-T1 Valid prediction for Augustus_model.g17214.t1 Valid prediction for GeneMark_model.43822_t Valid prediction for snap_scaffold_10-snap.1695-T1 Valid prediction for snap_scaffold_10-snap.1720-T1 Valid prediction for GeneMark_model.43782_t Valid prediction for snap_scaffold_10-snap.1735-T1 Valid prediction for pasa_asmbl_4622.p1 Valid prediction for CodingQuarry_transcript_5494-T1 Valid prediction for snap_scaffold_10-snap.1718-T1 Valid prediction for GlimmerHMM_glimmerT_25643-T1 Valid prediction for GeneMark_model.43774_t Valid prediction for GeneMark_model.43795_t Valid prediction for GlimmerHMM_glimmerT_25633-T1 Valid prediction for Augustus_model.g17220.t1 Valid prediction for CodingQuarry_transcript_5495-T1 Valid prediction for GlimmerHMM_glimmerT_25653-T1 Valid prediction for GeneMark_model.43838_t Valid prediction for GlimmerHMM_glimmerT_25620-T1 Valid prediction for Augustus_model.g17212.t1 Valid prediction for GeneMark_model.43776_t Couldn't classify 113361, 113404 Sorry, prediction pasa_asmbl_4610.p1 fails validation. (ATG) GT 111566-111631 GT AGG (TTG) AG 111898-111986 GT AGG (GGC) AG 112416-112503 GT AGG (GAT) AG 112691-112768 GT AGG (GGT) AG 112955-113042 GT TGG (GTC) AG 113361-113404 CC GCC -recovered pasa_asmbl_4610.p1, initial, 111566, 111631 -recovered pasa_asmbl_4610.p1, internal, 111898, 111986 -recovered pasa_asmbl_4610.p1, internal, 112416, 112503 -recovered pasa_asmbl_4610.p1, internal, 112691, 112768 -recovered pasa_asmbl_4610.p1, internal, 112955, 113042 Valid prediction for snap_scaffold_10-snap.1744-T1 Valid prediction for snap_scaffold_10-snap.1707-T1 Valid prediction for GeneMark_model.43836_t Valid prediction for GlimmerHMM_glimmerT_25626-T1 Valid prediction for GeneMark_model.43811_t Valid prediction for GeneMark_model.43846_t Valid prediction for GeneMark_model.43797_t Valid prediction for pasa_asmbl_4624.p1 Valid prediction for GeneMark_model.43778_t Valid prediction for snap_scaffold_10-snap.1714-T1 Valid prediction for GeneMark_model.43828_t Valid prediction for GeneMark_model.43779_t Valid prediction for GeneMark_model.43785_t Valid prediction for GeneMark_model.43794_t Valid prediction for snap_scaffold_10-snap.1732-T1 Valid prediction for snap_scaffold_10-snap.1697-T1 Valid prediction for snap_scaffold_10-snap.1733-T1 Valid prediction for GeneMark_model.43824_t Valid prediction for Augustus_model.g17217.t1 Valid prediction for GlimmerHMM_glimmerT_25657-T1 Valid prediction for GeneMark_model.43840_t Valid prediction for snap_scaffold_10-snap.1738-T1 Valid prediction for HiQ_model.g17210.t1 Valid prediction for snap_scaffold_10-snap.1740-T1 Valid prediction for snap_scaffold_10-snap.1746-T1 Valid prediction for Augustus_model.g17192.t1 Couldn't classify 113754, 113894 Sorry, prediction pasa_asmbl_4612.p2 fails validation. (TAC) GG 113754-113894 GC ATG (ATC) AG 114102-114194 GT TGG (TGT) AG 114556-114672 GT AGG (GAG) AG 114780-114990 GT AGG (GCT) AG 115118-115428 TG AGT -recovered pasa_asmbl_4612.p2, terminal, 115118, 115428 -recovered pasa_asmbl_4612.p2, internal, 114102, 114194 -recovered pasa_asmbl_4612.p2, internal, 114556, 114672 -recovered pasa_asmbl_4612.p2, internal, 114780, 114990 Valid prediction for GlimmerHMM_glimmerT_25632-T1 Valid prediction for GeneMark_model.43820_t Valid prediction for GeneMark_model.43770_t Valid prediction for pasa_asmbl_4637.p1 Valid prediction for snap_scaffold_10-snap.1728-T1 Valid prediction for GeneMark_model.43765_t Valid prediction for GeneMark_model.43799_t Couldn't classify 84980, 85080 Sorry, prediction pasa_asmbl_4608.p1 fails validation. (ATT) TC 84980-85080 GT ACG (GTT) AG 85445-85547 GT AGG (GCG) AG 87252-87362 GT AGG (GTC) AG 87512-87520 CC AAC -recovered pasa_asmbl_4608.p1, terminal, 87512, 87520 -recovered pasa_asmbl_4608.p1, internal, 85445, 85547 -recovered pasa_asmbl_4608.p1, internal, 87252, 87362 Couldn't classify 338175, 338228 Sorry, prediction pasa_asmbl_4627.p1 fails validation. (ATG) AC 337005-337058 GT AGG (TTT) AG 337509-337670 GT TTG (GAT) AG 337752-337790 GT AGG (GTG) AG 337913-338020 GT AGG (CTT) AG 338175-338228 CG CAC -recovered pasa_asmbl_4627.p1, initial, 337005, 337058 -recovered pasa_asmbl_4627.p1, internal, 337509, 337670 -recovered pasa_asmbl_4627.p1, internal, 337752, 337790 -recovered pasa_asmbl_4627.p1, internal, 337913, 338020 Valid prediction for GlimmerHMM_glimmerT_25624-T1 Valid prediction for GeneMark_model.43845_t Valid prediction for snap_scaffold_10-snap.1716-T1 Valid prediction for Augustus_model.g17193.t1 Valid prediction for snap_scaffold_10-snap.1701-T1 Valid prediction for CodingQuarry_transcript_5496-T1 Valid prediction for GlimmerHMM_glimmerT_25636-T1 Valid prediction for Augustus_model.g17196.t1 Valid prediction for GlimmerHMM_glimmerT_25639-T1 Valid prediction for GlimmerHMM_glimmerT_25623-T1 Valid prediction for snap_scaffold_10-snap.1731-T1 Valid prediction for GlimmerHMM_glimmerT_25646-T1 Valid prediction for Augustus_model.g17208.t1 Valid prediction for GeneMark_model.43815_t Valid prediction for GeneMark_model.43802_t Valid prediction for GeneMark_model.43768_t Valid prediction for snap_scaffold_10-snap.1724-T1 Valid prediction for Augustus_model.g17205.t1 Valid prediction for GeneMark_model.43831_t Valid prediction for CodingQuarry_transcript_5502-T1 Valid prediction for Augustus_model.g17191.t1 Couldn't classify 366448, 366549 Sorry, prediction pasa_asmbl_4633.p1 fails validation. (TGT) CA 366448-366549 GT TGG (GAG) AG 366878-367011 GT AGG (CGT) AG 367555-367752 GT AGG (GTT) AG 369310-369547 GT AGG (GTA) AG 370325-370465 GT AGG (ATA) AG 371791-371945 GT AGG (GTG) AG 372114-372273 GA GAG -recovered pasa_asmbl_4633.p1, terminal, 372114, 372273 -recovered pasa_asmbl_4633.p1, internal, 366878, 367011 -recovered pasa_asmbl_4633.p1, internal, 367555, 367752 -recovered pasa_asmbl_4633.p1, internal, 369310, 369547 -recovered pasa_asmbl_4633.p1, internal, 370325, 370465 -recovered pasa_asmbl_4633.p1, internal, 371791, 371945 Valid prediction for snap_scaffold_10-snap.1745-T1 Valid prediction for GeneMark_model.43833_t Valid prediction for snap_scaffold_10-snap.1730-T1 Valid prediction for snap_scaffold_10-snap.1739-T1 Valid prediction for snap_scaffold_10-snap.1692-T1 Valid prediction for GeneMark_model.43844_t Valid prediction for Augustus_model.g17216.t1 Valid prediction for GlimmerHMM_glimmerT_25648-T1 Valid prediction for GeneMark_model.43813_t Valid prediction for GeneMark_model.43843_t Valid prediction for GeneMark_model.43848_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_10-snap.1700-T1 Sorry, intron length (8) is less than minimum required (10) Couldn't classify 301411, 301728 Sorry, prediction pasa_asmbl_3521.p1 fails validation. (AAG) CT 301411-301728 CC AGC Valid prediction for snap_scaffold_10-snap.1727-T1 Valid prediction for CodingQuarry_transcript_5492-T1 Valid prediction for CodingQuarry_transcript_5501-T1 Valid prediction for GeneMark_model.43769_t Valid prediction for GeneMark_model.43826_t Valid prediction for GeneMark_model.43786_t Valid prediction for Augustus_model.g17200.t1 Valid prediction for GlimmerHMM_glimmerT_25652-T1 Valid prediction for GeneMark_model.43780_t Valid prediction for snap_scaffold_10-snap.1742-T1 Valid prediction for snap_scaffold_10-snap.1709-T1 Valid prediction for GeneMark_model.43816_t Valid prediction for snap_scaffold_10-snap.1715-T1 Valid prediction for GeneMark_model.43796_t Valid prediction for HiQ_model.g17202.t1 Valid prediction for snap_scaffold_10-snap.1719-T1 Couldn't classify 2949, 2966 Sorry, prediction pasa_asmbl_3565.p1 fails validation. (ATT) GC 2949-2966 GT AGG (AGT) AG 3172-3306 GT TTG (GAG) AG 3847-3960 GT AGG (TTT) AG 4223-4305 GT TGG (CCA) AG 4625-4730 GT CGG (AGC) AG 5593-5739 GT GGG (CTT) AG 5874-6023 GT AGG (ATT) AG 6177-6345 GT AGG (TAG) AG 7510-7617 GT AGG (TTA) AG 7841-7969 GT AGG (ACA) AG 8149-8878 GT AGG (CAA) AG 9277-9317 GT AGG (GCA) AG 11173-11257 GT CGG (ACG) AG 11510-12405 GT AAG (GCC) AG 12570-12646 TG GAT -recovered pasa_asmbl_3565.p1, terminal, 12570, 12646 -recovered pasa_asmbl_3565.p1, internal, 3172, 3306 -recovered pasa_asmbl_3565.p1, internal, 3847, 3960 -recovered pasa_asmbl_3565.p1, internal, 4223, 4305 -recovered pasa_asmbl_3565.p1, internal, 4625, 4730 -recovered pasa_asmbl_3565.p1, internal, 5593, 5739 -recovered pasa_asmbl_3565.p1, internal, 5874, 6023 -recovered pasa_asmbl_3565.p1, internal, 6177, 6345 -recovered pasa_asmbl_3565.p1, internal, 7510, 7617 -recovered pasa_asmbl_3565.p1, internal, 7841, 7969 -recovered pasa_asmbl_3565.p1, internal, 8149, 8878 -recovered pasa_asmbl_3565.p1, internal, 9277, 9317 -recovered pasa_asmbl_3565.p1, internal, 11173, 11257 -recovered pasa_asmbl_3565.p1, internal, 11510, 12405 Valid prediction for snap_scaffold_10-snap.1737-T1 Sorry, intron length (8) is less than minimum required (10) Valid prediction for GeneMark_model.43810_t Valid prediction for GeneMark_model.43803_t Valid prediction for snap_scaffold_10-snap.1749-T1 Valid prediction for GeneMark_model.43787_t Couldn't classify 120048, 120080 Sorry, prediction pasa_asmbl_3553.p1 fails validation. (GGA) GC 120048-120080 GT AGG (CTG) AG 120952-121083 GT AGG (GGC) AG 121537-121747 GT AGG (GTG) AG 122126-122272 GT AGG (GTA) AG 122942-123099 GT AGG (GAG) AG 123221-123316 AA GAA -recovered pasa_asmbl_3553.p1, terminal, 123221, 123316 -recovered pasa_asmbl_3553.p1, internal, 120952, 121083 -recovered pasa_asmbl_3553.p1, internal, 121537, 121747 -recovered pasa_asmbl_3553.p1, internal, 122126, 122272 -recovered pasa_asmbl_3553.p1, internal, 122942, 123099 Valid prediction for GlimmerHMM_glimmerT_25641-T1 Valid prediction for GlimmerHMM_glimmerT_25634-T1 Couldn't classify 144659, 145633 Sorry, prediction pasa_asmbl_3552.p2 fails validation. (ATG) CA 144659-145633 TT CGT Valid prediction for GeneMark_model.43823_t Valid prediction for snap_scaffold_10-snap.1748-T1 Valid prediction for Augustus_model.g17222.t1 Valid prediction for GeneMark_model.43814_t Valid prediction for snap_scaffold_10-snap.1717-T1 Valid prediction for HiQ_model.g17218.t1 Valid prediction for pasa_asmbl_3540.p1 Valid prediction for GlimmerHMM_glimmerT_25645-T1 Valid prediction for GlimmerHMM_glimmerT_25628-T1 Valid prediction for GlimmerHMM_glimmerT_25655-T1 Valid prediction for GeneMark_model.43835_t Valid prediction for snap_scaffold_10-snap.1722-T1 Valid prediction for GlimmerHMM_glimmerT_25642-T1 Valid prediction for GeneMark_model.43798_t Valid prediction for GeneMark_model.43800_t Valid prediction for GeneMark_model.43842_t Valid prediction for Augustus_model.g17197.t1 Valid prediction for GlimmerHMM_glimmerT_25640-T1 Valid prediction for GlimmerHMM_glimmerT_25638-T1 Valid prediction for Augustus_model.g17195.t1 Valid prediction for GeneMark_model.43791_t Valid prediction for Augustus_model.g17201.t1 Valid prediction for Augustus_model.g17194.t1 Valid prediction for GlimmerHMM_glimmerT_25637-T1 Valid prediction for GeneMark_model.43771_t Valid prediction for GlimmerHMM_glimmerT_25621-T1 Valid prediction for snap_scaffold_10-snap.1703-T1 Valid prediction for pasa_asmbl_3561.p1 Valid prediction for snap_scaffold_10-snap.1702-T1 Valid prediction for GlimmerHMM_glimmerT_25631-T1 Valid prediction for Augustus_model.g17215.t1 Valid prediction for GlimmerHMM_glimmerT_25651-T1 Valid prediction for Augustus_model.g17207.t1 Valid prediction for snap_scaffold_10-snap.1708-T1 Valid prediction for Augustus_model.g17219.t1 Valid prediction for snap_scaffold_10-snap.1726-T1 Valid prediction for GeneMark_model.43777_t Valid prediction for GlimmerHMM_glimmerT_25647-T1 Valid prediction for GeneMark_model.43784_t Valid prediction for GeneMark_model.43789_t Valid prediction for Augustus_model.g17204.t1 Valid prediction for snap_scaffold_10-snap.1698-T1 Valid prediction for snap_scaffold_10-snap.1704-T1 Valid prediction for snap_scaffold_10-snap.1696-T1 Couldn't classify 286771, 286913 Sorry, prediction pasa_asmbl_3524.p1 fails validation. (ATG) AA 283287-283617 GT AGG (GGT) AG 285125-285263 GT GGG (GTT) AG 286375-286547 GT GGG (CTG) AG 286771-286913 GG TGG -recovered pasa_asmbl_3524.p1, initial, 283287, 283617 -recovered pasa_asmbl_3524.p1, internal, 285125, 285263 -recovered pasa_asmbl_3524.p1, internal, 286375, 286547 Valid prediction for GeneMark_model.43830_t Valid prediction for GeneMark_model.43783_t Valid prediction for HiQ_model.g17209.t1 Valid prediction for Augustus_model.g17198.t1 Valid prediction for GeneMark_model.43804_t Valid prediction for snap_scaffold_10-snap.1750-T1 Valid prediction for Augustus_model.g17206.t1 Valid prediction for GlimmerHMM_glimmerT_25627-T1 Valid prediction for GeneMark_model.43832_t Couldn't classify 48113, 48247 Sorry, prediction pasa_asmbl_3562.p1 fails validation. (CGG) CA 48113-48247 GT AGG (GAG) AG 48404-48493 GT AGG (GAT) AG 48595-48756 GT AAG (GTG) AG 48883-49028 GT TGG (GGA) AG 49242-49377 GT TGG (CTA) AG 49567-49686 GG AGG -recovered pasa_asmbl_3562.p1, terminal, 49567, 49686 -recovered pasa_asmbl_3562.p1, internal, 48404, 48493 -recovered pasa_asmbl_3562.p1, internal, 48595, 48756 -recovered pasa_asmbl_3562.p1, internal, 48883, 49028 -recovered pasa_asmbl_3562.p1, internal, 49242, 49377 Valid prediction for GeneMark_model.43829_t Valid prediction for GeneMark_model.43806_t Valid prediction for GeneMark_model.43775_t Couldn't classify 51303, 51439 Sorry, prediction CodingQuarry_transcript_5500-T1 fails validation. (ATG) AG 50829-51210 GT TGG (GCA) AT 51303-51439 TA GAT -recovered CodingQuarry_transcript_5500-T1, initial, 50829, 51210 -recovered CodingQuarry_transcript_5500-T1, internal, 50829, 51210 Valid prediction for GlimmerHMM_glimmerT_25644-T1 Valid prediction for CodingQuarry_transcript_5493-T1 Valid prediction for snap_scaffold_10-snap.1729-T1 Couldn't classify 273579, 273814 Sorry, prediction pasa_asmbl_3525.p1 fails validation. (TTC) GC 273579-273814 GT AAG (ATG) AG 274156-274370 GT AGG (AGG) AG 275369-275631 AG AAA add_exon() Sorry, pasa_asmbl_3525.p1 274156-274370-initial-1 is invalid. -recovered pasa_asmbl_3525.p1, initial, 274156, 274370 -recovered pasa_asmbl_3525.p1, terminal, 275369, 275631 -recovered pasa_asmbl_3525.p1, internal, 274156, 274370 Valid prediction for snap_scaffold_10-snap.1741-T1 Couldn't classify 260849, 260873 Couldn't classify 273182, 273311 Sorry, prediction pasa_asmbl_3526.p1 fails validation. (GCT) TA 260849-260873 GT AGG (GCT) AG 263130-263280 GT CTG (GCG) AG 263486-263560 GT ATG (TAA) AG 263848-263991 GT TTG (GAT) AG 264150-264293 GT CTG (GAA) AG 264442-264608 GT TGG (GTA) AG 264879-265011 GT CTG (GTA) AG 265549-265617 GT ATG (AAT) AG 266534-266605 GT CTG (ATC) AG 266736-266807 GT CTG (GGC) AG 266924-267087 GT AGG (GTC) AG 267857-267981 GT AGG (GGC) AG 268206-268303 GT TGG (GTG) AG 269127-269266 GT TGG (GTG) AG 271211-271304 GT AAG (GTG) AG 272135-272272 GT AGG (CGG) AG 272449-272689 GT AGG (ATT) AG 272918-273048 GT AGG (TGT) AG 273182-273311 AT GCA add_exon() Sorry, pasa_asmbl_3526.p1 271211-271304-terminal-3 is invalid. -recovered pasa_asmbl_3526.p1, terminal, 271211, 271304 -recovered pasa_asmbl_3526.p1, internal, 263130, 263280 -recovered pasa_asmbl_3526.p1, internal, 263486, 263560 -recovered pasa_asmbl_3526.p1, internal, 263848, 263991 -recovered pasa_asmbl_3526.p1, internal, 264150, 264293 -recovered pasa_asmbl_3526.p1, internal, 264442, 264608 -recovered pasa_asmbl_3526.p1, internal, 264879, 265011 -recovered pasa_asmbl_3526.p1, internal, 265549, 265617 -recovered pasa_asmbl_3526.p1, internal, 266534, 266605 -recovered pasa_asmbl_3526.p1, internal, 266736, 266807 -recovered pasa_asmbl_3526.p1, internal, 266924, 267087 -recovered pasa_asmbl_3526.p1, internal, 267857, 267981 -recovered pasa_asmbl_3526.p1, internal, 268206, 268303 -recovered pasa_asmbl_3526.p1, internal, 269127, 269266 -recovered pasa_asmbl_3526.p1, internal, 271211, 271304 -recovered pasa_asmbl_3526.p1, internal, 272135, 272272 -recovered pasa_asmbl_3526.p1, internal, 272449, 272689 -recovered pasa_asmbl_3526.p1, internal, 272918, 273048 Valid prediction for snap_scaffold_10-snap.1699-T1 Valid prediction for GeneMark_model.43761_t Valid prediction for GeneMark_model.43809_t Valid prediction for GeneMark_model.43847_t Valid prediction for GeneMark_model.43801_t Valid prediction for GeneMark_model.43849_t Couldn't classify 288000, 288033 Couldn't classify 288388, 288535 Sorry, prediction pasa_asmbl_3523.p1 fails validation. (GAA) AC 288000-288033 GT TGG (AGG) AG 288170-288311 GT AGG (GTC) AG 288388-288535 CA GAC -recovered pasa_asmbl_3523.p1, internal, 288170, 288311 Valid prediction for Augustus_model.g17199.t1 Valid prediction for GeneMark_model.43773_t Valid prediction for snap_scaffold_10-snap.1694-T1 Valid prediction for Augustus_model.g17203.t1 Valid prediction for snap_scaffold_10-snap.1706-T1 Valid prediction for GeneMark_model.43781_t Valid prediction for snap_scaffold_10-snap.1723-T1 Valid prediction for GeneMark_model.43812_t Valid prediction for GeneMark_model.43763_t Couldn't classify 292681, 292820 Couldn't classify 296040, 296119 Sorry, prediction pasa_asmbl_3522.p1 fails validation. (GTA) GT 292681-292820 GT AGG (CGG) AG 295071-295276 GT AGG (ATC) AG 296040-296119 TA GGT -recovered pasa_asmbl_3522.p1, internal, 295071, 295276 Valid prediction for snap_scaffold_10-snap.1721-T1 Valid prediction for GlimmerHMM_glimmerT_25658-T1 Valid prediction for GeneMark_model.43821_t Valid prediction for snap_scaffold_10-snap.1712-T1 Valid prediction for GeneMark_model.43825_t Valid prediction for GeneMark_model.43792_t Valid prediction for GeneMark_model.43817_t Valid prediction for GeneMark_model.43766_t Valid prediction for GlimmerHMM_glimmerT_25630-T1 Valid prediction for snap_scaffold_10-snap.1691-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 15051, rend_intergenic: 12319 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28897, rend_intergenic: 23143 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 30091, rend_intergenic: 29576 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 60575, rend_intergenic: 42575 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 72828, rend_intergenic: 61533 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 88480, rend_intergenic: 73007 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 103742, rend_intergenic: 92504 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 110736, rend_intergenic: 104838 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 147758, rend_intergenic: 125691 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 163916, rend_intergenic: 147860 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 176205, rend_intergenic: 164293 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 193810, rend_intergenic: 177595 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 198442, rend_intergenic: 194315 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 213036, rend_intergenic: 201913 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 224117, rend_intergenic: 213617 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 394067 -exon list size: 1086 building trellis 0.1 0.2 0.3 0.4 0.5 0.6 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.7 1.8 1.9 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 2.8 2.9 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 3.9 4.0 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 4.8 4.9 5.0 5.1 5.1 5.2 5.3 5.4 5.5 5.6 5.7 5.8 5.9 6.0 6.1 6.2 6.2 6.3 6.4 6.5 6.6 6.7 6.8 6.9 7.0 7.1 7.2 7.3 7.4 7.4 7.5 7.6 7.7 7.8 7.9 8.0 8.1 8.2 8.3 8.4 8.5 8.5 8.6 8.7 8.8 8.9 9.0 9.1 9.2 9.3 9.4 9.5 9.6 9.7 9.7 9.8 9.9 10.0 10.1 10.2 10.3 10.4 10.5 10.6 10.7 10.8 10.8 10.9 11.0 11.1 11.2 11.3 11.4 11.5 11.6 11.7 11.8 11.9 11.9 12.0 12.1 12.2 12.3 12.4 12.5 12.6 12.7 12.8 12.9 13.0 13.1 13.1 13.2 13.3 13.4 13.5 13.6 13.7 13.8 13.9 14.0 14.1 14.2 14.2 14.3 14.4 14.5 14.6 14.7 14.8 14.9 15.0 15.1 15.2 15.3 15.3 15.4 15.5 15.6 15.7 15.8 15.9 16.0 16.1 16.2 16.3 16.4 16.5 16.5 16.6 16.7 16.8 16.9 17.0 17.1 17.2 17.3 17.4 17.5 17.6 17.6 17.7 17.8 17.9 18.0 18.1 18.2 18.3 18.4 18.5 18.6 18.7 18.8 18.8 18.9 19.0 19.1 19.2 19.3 19.4 19.5 19.6 19.7 19.8 19.9 19.9 20.0 20.1 20.2 20.3 20.4 20.5 20.6 20.7 20.8 20.9 21.0 21.0 21.1 21.2 21.3 21.4 21.5 21.6 21.7 21.8 21.9 22.0 22.1 22.2 22.2 22.3 22.4 22.5 22.6 22.7 22.8 22.9 23.0 23.1 23.2 23.3 23.3 23.4 23.5 23.6 23.7 23.8 23.9 24.0 24.1 24.2 24.3 24.4 24.4 24.5 24.6 24.7 24.8 24.9 25.0 25.1 25.2 25.3 25.4 25.5 25.6 25.6 25.7 25.8 25.9 26.0 26.1 26.2 26.3 26.4 26.5 26.6 26.7 26.7 26.8 26.9 27.0 27.1 27.2 27.3 27.4 27.5 27.6 27.7 27.8 27.8 27.9 28.0 28.1 28.2 28.3 28.4 28.5 28.6 28.7 28.8 28.9 29.0 29.0 29.1 29.2 29.3 29.4 29.5 29.6 29.7 29.8 29.9 30.0 30.1 30.1 30.2 30.3 30.4 30.5 30.6 30.7 30.8 30.9 31.0 31.1 31.2 31.2 31.3 31.4 31.5 31.6 31.7 31.8 31.9 32.0 32.1 32.2 32.3 32.4 32.4 32.5 32.6 32.7 32.8 32.9 33.0 33.1 33.2 33.3 33.4 33.5 33.5 33.6 33.7 33.8 33.9 34.0 34.1 34.2 34.3 34.4 34.5 34.6 34.7 34.7 34.8 34.9 35.0 35.1 35.2 35.3 35.4 35.5 35.6 35.7 35.8 35.8 35.9 36.0 36.1 36.2 36.3 36.4 36.5 36.6 36.7 36.8 36.9 36.9 37.0 37.1 37.2 37.3 37.4 37.5 37.6 37.7 37.8 37.9 38.0 38.1 38.1 38.2 38.3 38.4 38.5 38.6 38.7 38.8 38.9 39.0 39.1 39.2 39.2 39.3 39.4 39.5 39.6 39.7 39.8 39.9 40.0 40.1 40.2 40.3 40.3 40.4 40.5 40.6 40.7 40.8 40.9 41.0 41.1 41.2 41.3 41.4 41.5 41.5 41.6 41.7 41.8 41.9 42.0 42.1 42.2 42.3 42.4 42.5 42.6 42.6 42.7 42.8 42.9 43.0 43.1 43.2 43.3 43.4 43.5 43.6 43.7 43.8 43.8 43.9 44.0 44.1 44.2 44.3 44.4 44.5 44.6 44.7 44.8 44.9 44.9 45.0 45.1 45.2 45.3 45.4 45.5 45.6 45.7 45.8 45.9 46.0 46.0 46.1 46.2 46.3 46.4 46.5 46.6 46.7 46.8 46.9 47.0 47.1 47.2 47.2 47.3 47.4 47.5 47.6 47.7 47.8 47.9 48.0 48.1 48.2 48.3 48.3 48.4 48.5 48.6 48.7 48.8 48.9 49.0 49.1 49.2 49.3 49.4 49.4 49.5 49.6 49.7 49.8 49.9 50.0 50.1 50.2 50.3 50.4 50.5 50.6 50.6 50.7 50.8 50.9 51.0 51.1 51.2 51.3 51.4 51.5 51.6 51.7 51.7 51.8 51.9 52.0 52.1 52.2 52.3 52.4 52.5 52.6 52.7 52.8 52.8 52.9 53.0 53.1 53.2 53.3 53.4 53.5 53.6 53.7 53.8 53.9 54.0 54.0 54.1 54.2 54.3 54.4 54.5 54.6 54.7 54.8 54.9 55.0 55.1 55.1 55.2 55.3 55.4 55.5 55.6 55.7 55.8 55.9 56.0 56.1 56.2 56.2 56.3 56.4 56.5 56.6 56.7 56.8 56.9 57.0 57.1 57.2 57.3 57.4 57.4 57.5 57.6 57.7 57.8 57.9 58.0 58.1 58.2 58.3 58.4 58.5 58.5 58.6 58.7 58.8 58.9 59.0 59.1 59.2 59.3 59.4 59.5 59.6 59.7 59.7 59.8 59.9 60.0 60.1 60.2 60.3 60.4 60.5 60.6 60.7 60.8 60.8 60.9 61.0 61.1 61.2 61.3 61.4 61.5 61.6 61.7 61.8 61.9 61.9 62.0 62.1 62.2 62.3 62.4 62.5 62.6 62.7 62.8 62.9 63.0 63.1 63.1 63.2 63.3 63.4 63.5 63.6 63.7 63.8 63.9 64.0 64.1 64.2 64.2 64.3 64.4 64.5 64.6 64.7 64.8 64.9 65.0 65.1 65.2 65.3 65.3 65.4 65.5 65.6 65.7 65.8 65.9 66.0 66.1 66.2 66.3 66.4 66.5 66.5 66.6 66.7 66.8 66.9 67.0 67.1 67.2 67.3 67.4 67.5 67.6 67.6 67.7 67.8 67.9 68.0 68.1 68.2 68.3 68.4 68.5 68.6 68.7 68.8 68.8 68.9 69.0 69.1 69.2 69.3 69.4 69.5 69.6 69.7 69.8 69.9 69.9 70.0 70.1 70.2 70.3 70.4 70.5 70.6 70.7 70.8 70.9 71.0 71.0 71.1 71.2 71.3 71.4 71.5 71.6 71.7 71.8 71.9 72.0 72.1 72.2 72.2 72.3 72.4 72.5 72.6 72.7 72.8 72.9 73.0 73.1 73.2 73.3 73.3 73.4 73.5 73.6 73.7 73.8 73.9 74.0 74.1 74.2 74.3 74.4 74.4 74.5 74.6 74.7 74.8 74.9 75.0 75.1 75.2 75.3 75.4 75.5 75.6 75.6 75.7 75.8 75.9 76.0 76.1 76.2 76.3 76.4 76.5 76.6 76.7 76.7 76.8 76.9 77.0 77.1 77.2 77.3 77.4 77.5 77.6 77.7 77.8 77.8 77.9 78.0 78.1 78.2 78.3 78.4 78.5 78.6 78.7 78.8 78.9 79.0 79.0 79.1 79.2 79.3 79.4 79.5 79.6 79.7 79.8 79.9 80.0 80.1 80.1 80.2 80.3 80.4 80.5 80.6 80.7 80.8 80.9 81.0 81.1 81.2 81.2 81.3 81.4 81.5 81.6 81.7 81.8 81.9 82.0 82.1 82.2 82.3 82.4 82.4 82.5 82.6 82.7 82.8 82.9 83.0 83.1 83.2 83.3 83.4 83.5 83.5 83.6 83.7 83.8 83.9 84.0 84.1 84.2 84.3 84.4 84.5 84.6 84.7 84.7 84.8 84.9 85.0 85.1 85.2 85.3 85.4 85.5 85.6 85.7 85.8 85.8 85.9 86.0 86.1 86.2 86.3 86.4 86.5 86.6 86.7 86.8 86.9 86.9 87.0 87.1 87.2 87.3 87.4 87.5 87.6 87.7 87.8 87.9 88.0 88.1 88.1 88.2 88.3 88.4 88.5 88.6 88.7 88.8 88.9 89.0 89.1 89.2 89.2 89.3 89.4 89.5 89.6 89.7 89.8 89.9 90.0 90.1 90.2 90.3 90.3 90.4 90.5 90.6 90.7 90.8 90.9 91.0 91.1 91.2 91.3 91.4 91.5 91.5 91.6 91.7 91.8 91.9 92.0 92.1 92.2 92.3 92.4 92.5 92.6 92.6 92.7 92.8 92.9 93.0 93.1 93.2 93.3 93.4 93.5 93.6 93.7 93.8 93.8 93.9 94.0 94.1 94.2 94.3 94.4 94.5 94.6 94.7 94.8 94.9 94.9 95.0 95.1 95.2 95.3 95.4 95.5 95.6 95.7 95.8 95.9 96.0 96.0 96.1 96.2 96.3 96.4 96.5 96.6 96.7 96.8 96.9 97.0 97.1 97.2 97.2 97.3 97.4 97.5 97.6 97.7 97.8 97.9 98.0 98.1 98.2 98.3 98.3 98.4 98.5 98.6 98.7 98.8 98.9 99.0 99.1 99.2 99.3 99.4 99.4 99.5 99.6 99.7 99.8 99.9 -found 51 predictions from path traversal Error with prediction: snap lend_intergenic: 15051, rend_intergenic: 12319 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28897, rend_intergenic: 23143 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 30091, rend_intergenic: 29576 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 60575, rend_intergenic: 42575 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 72828, rend_intergenic: 61533 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 88480, rend_intergenic: 73007 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 103742, rend_intergenic: 92504 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 110736, rend_intergenic: 104838 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 147758, rend_intergenic: 125691 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 163916, rend_intergenic: 147860 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 176205, rend_intergenic: 164293 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 193810, rend_intergenic: 177595 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 198442, rend_intergenic: 194315 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 213036, rend_intergenic: 201913 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 224117, rend_intergenic: 213617 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 30 predictions persist after filtering for low support