-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_10/scaffold_10_7636058-7889873 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_10-snap.1561-T1 Valid prediction for GeneMark_model.43604_t Valid prediction for snap_scaffold_10-snap.1528-T1 Valid prediction for GeneMark_model.43606_t Valid prediction for GlimmerHMM_glimmerT_25503-T1 Valid prediction for snap_scaffold_10-snap.1533-T1 Valid prediction for CodingQuarry_transcript_5455-T1 Valid prediction for pasa_asmbl_4581.p1 Valid prediction for GlimmerHMM_glimmerT_25510-T1 Valid prediction for snap_scaffold_10-snap.1554-T1 Valid prediction for HiQ_model.g17132.t1 Valid prediction for GlimmerHMM_glimmerT_25499-T1 Valid prediction for GeneMark_model.43617_t Valid prediction for GeneMark_model.43587_t Valid prediction for GeneMark_model.43619_t Valid prediction for GeneMark_model.43621_t Valid prediction for GeneMark_model.43589_t Valid prediction for Augustus_model.g17124.t1 Valid prediction for snap_scaffold_10-snap.1538-T1 Valid prediction for GeneMark_model.43598_t Couldn't classify 49129, 49249 Couldn't classify 49479, 49601 Sorry, prediction CodingQuarry_transcript_5457-T1 fails validation. (ATG) CC 46983-47110 GT AGG (GCC) AG 47548-47632 GT AGG (GAG) AG 47772-47959 GT GGG (GAC) AG 49129-49249 GG ATG (GGC) CA 49479-49601 CC AAC -recovered CodingQuarry_transcript_5457-T1, initial, 46983, 47110 -recovered CodingQuarry_transcript_5457-T1, internal, 47548, 47632 -recovered CodingQuarry_transcript_5457-T1, internal, 47772, 47959 Valid prediction for snap_scaffold_10-snap.1556-T1 Valid prediction for GeneMark_model.43586_t Valid prediction for HiQ_model.g17129.t1 Valid prediction for Augustus_model.g17131.t1 Couldn't classify 18107, 18173 Couldn't classify 20010, 20139 Sorry, prediction pasa_asmbl_4566.p1 fails validation. (ACT) AG 18107-18173 GT AGG (ATG) AG 19193-19243 GT TGG (ACT) AG 19392-19608 GT ACG (GAA) AG 20010-20139 GA ACG add_exon() Sorry, pasa_asmbl_4566.p1 19193-19243-initial-1 is invalid. -recovered pasa_asmbl_4566.p1, initial, 19193, 19243 -recovered pasa_asmbl_4566.p1, internal, 18107, 18173 -recovered pasa_asmbl_4566.p1, internal, 19193, 19243 -recovered pasa_asmbl_4566.p1, internal, 19392, 19608 Valid prediction for Augustus_model.g17143.t1 Valid prediction for GeneMark_model.43624_t Valid prediction for snap_scaffold_10-snap.1540-T1 Valid prediction for snap_scaffold_10-snap.1545-T1 Valid prediction for snap_scaffold_10-snap.1537-T1 Valid prediction for snap_scaffold_10-snap.1550-T1 Couldn't classify 14457, 14822 Couldn't classify 15755, 15829 Sorry, prediction pasa_asmbl_4565.p1 fails validation. (CAC) CC 14457-14822 GT ACG (GGT) AG 15755-15829 AC CTA Couldn't classify 200561, 200722 Sorry, prediction pasa_asmbl_4585.p1 fails validation. (GGG) GT 200561-200722 GT AGG (GTA) AG 200820-200955 GT CTG (TTC) AG 201173-201270 GT ATG (TTT) AG 201393-201462 GT TGG (ATA) AG 201558-201638 GT AGG (ACC) AG 201780-201889 GT ATG (GTG) AG 202858-202917 GT ATG (GCG) AG 203063-203131 GT TGG (TTG) AG 203318-203394 GT GGG (GAT) AG 203577-203749 GT AGG (GTG) AG 204350-204606 TG GAT -recovered pasa_asmbl_4585.p1, terminal, 204350, 204606 -recovered pasa_asmbl_4585.p1, internal, 200820, 200955 -recovered pasa_asmbl_4585.p1, internal, 201173, 201270 -recovered pasa_asmbl_4585.p1, internal, 201393, 201462 -recovered pasa_asmbl_4585.p1, internal, 201558, 201638 -recovered pasa_asmbl_4585.p1, internal, 201780, 201889 -recovered pasa_asmbl_4585.p1, internal, 202858, 202917 -recovered pasa_asmbl_4585.p1, internal, 203063, 203131 -recovered pasa_asmbl_4585.p1, internal, 203318, 203394 -recovered pasa_asmbl_4585.p1, internal, 203577, 203749 Valid prediction for GeneMark_model.43626_t Valid prediction for snap_scaffold_10-snap.1557-T1 Valid prediction for snap_scaffold_10-snap.1532-T1 Valid prediction for snap_scaffold_10-snap.1558-T1 Valid prediction for GlimmerHMM_glimmerT_25506-T1 Valid prediction for snap_scaffold_10-snap.1534-T1 Couldn't classify 74018, 74110 Sorry, prediction pasa_asmbl_4580.p1 fails validation. (TCA) GG 74018-74110 GT CTG (CAA) AG 74220-74291 GT TTG (GGC) AG 74719-74905 GT TGG (ATC) AG 75150-75234 GT AAG (TGA) AG 75551-75681 GT AGG (ATT) AG 76003-76136 GT GGG (AGA) AG 76214-76398 GT AAG (GTA) AG 76576-76853 GT GGG (GTG) AG 77191-77378 AA AGA -recovered pasa_asmbl_4580.p1, terminal, 77191, 77378 -recovered pasa_asmbl_4580.p1, internal, 74220, 74291 -recovered pasa_asmbl_4580.p1, internal, 74719, 74905 -recovered pasa_asmbl_4580.p1, internal, 75150, 75234 -recovered pasa_asmbl_4580.p1, internal, 75551, 75681 -recovered pasa_asmbl_4580.p1, internal, 76003, 76136 -recovered pasa_asmbl_4580.p1, internal, 76214, 76398 -recovered pasa_asmbl_4580.p1, internal, 76576, 76853 Valid prediction for GeneMark_model.43592_t Valid prediction for GeneMark_model.43596_t Valid prediction for HiQ_model.g17130.t1 Valid prediction for snap_scaffold_10-snap.1564-T1 Valid prediction for GeneMark_model.43605_t Valid prediction for CodingQuarry_transcript_5460-T1 Valid prediction for GlimmerHMM_glimmerT_25502-T1 Valid prediction for snap_scaffold_10-snap.1562-T1 Valid prediction for GeneMark_model.43616_t Valid prediction for snap_scaffold_10-snap.1527-T1 Valid prediction for snap_scaffold_10-snap.1539-T1 Valid prediction for pasa_asmbl_4583.p1 Couldn't classify 31119, 31199 Couldn't classify 32415, 32621 Sorry, prediction pasa_asmbl_4570.p2 fails validation. (CAG) AC 31119-31199 GT AGG (AAG) AG 31447-31493 GT AAG (GGA) AG 31852-31966 GT AGG (AAG) AG 32074-32202 GT AGG (GGG) AG 32415-32621 TC GCT add_exon() Sorry, pasa_asmbl_4570.p2 31447-31493-terminal-2 is invalid. -recovered pasa_asmbl_4570.p2, terminal, 31447, 31493 -recovered pasa_asmbl_4570.p2, internal, 31447, 31493 -recovered pasa_asmbl_4570.p2, internal, 31852, 31966 -recovered pasa_asmbl_4570.p2, internal, 32074, 32202 Valid prediction for snap_scaffold_10-snap.1535-T1 Valid prediction for GeneMark_model.43599_t Valid prediction for CodingQuarry_transcript_5458-T1 Couldn't classify 34926, 35495 Sorry, prediction pasa_asmbl_4576.p1 fails validation. (ATG) GT 34038-34658 GT AGG (GTT) AG 34926-35495 AT CCA -recovered pasa_asmbl_4576.p1, initial, 34038, 34658 Valid prediction for snap_scaffold_10-snap.1525-T1 Valid prediction for Augustus_model.g17126.t1 Valid prediction for GeneMark_model.43584_t Valid prediction for snap_scaffold_10-snap.1536-T1 Couldn't classify 49123, 49249 Couldn't classify 49479, 49591 Sorry, prediction CodingQuarry_transcript_5456-T1 fails validation. (ATG) AA 44757-44792 GT CTG (ATT) AG 46959-47110 GT AGG (GCC) AG 47548-47632 GT AGG (GAG) AG 47772-47959 GT GGG (CAG) AG 49123-49249 GG ATG (GGC) CA 49479-49591 GT GTG (GGG) AG 49971-50160 AA AGA -recovered CodingQuarry_transcript_5456-T1, initial, 44757, 44792 -recovered CodingQuarry_transcript_5456-T1, terminal, 49971, 50160 -recovered CodingQuarry_transcript_5456-T1, internal, 46959, 47110 -recovered CodingQuarry_transcript_5456-T1, internal, 47548, 47632 -recovered CodingQuarry_transcript_5456-T1, internal, 47772, 47959 Valid prediction for GeneMark_model.43612_t Valid prediction for GlimmerHMM_glimmerT_25509-T1 Valid prediction for snap_scaffold_10-snap.1529-T1 Valid prediction for HiQ_model.g17142.t1 Valid prediction for Augustus_model.g17123.t1 Valid prediction for CodingQuarry_transcript_5459-T1 Valid prediction for GeneMark_model.43593_t Valid prediction for GlimmerHMM_glimmerT_25501-T1 Valid prediction for GeneMark_model.43622_t Valid prediction for GlimmerHMM_glimmerT_25522-T1 Valid prediction for Augustus_model.g17125.t1 Valid prediction for GeneMark_model.43608_t Valid prediction for snap_scaffold_10-snap.1547-T1 Couldn't classify 23802, 23885 Couldn't classify 27565, 27748 Sorry, prediction pasa_asmbl_5087.p1 fails validation. (ATA) AG 23802-23885 GT CGG (CCT) AG 25564-25620 GT AGG (ACC) AG 26735-26784 GT AGG (CGC) AG 27565-27748 GG AAG -recovered pasa_asmbl_5087.p1, internal, 23802, 23885 -recovered pasa_asmbl_5087.p1, internal, 25564, 25620 -recovered pasa_asmbl_5087.p1, internal, 26735, 26784 Couldn't classify 46959, 47110 Sorry, prediction pasa_asmbl_4579.p1 fails validation. (ATT) AG 46959-47110 GT AGG (GCC) AG 47548-47632 GT AGG (GAG) AG 47772-47959 GT GGG (CAG) AG 49123-49399 TT AAT -recovered pasa_asmbl_4579.p1, terminal, 49123, 49399 -recovered pasa_asmbl_4579.p1, internal, 46959, 47110 -recovered pasa_asmbl_4579.p1, internal, 47548, 47632 -recovered pasa_asmbl_4579.p1, internal, 47772, 47959 Couldn't classify 35666, 36319 Sorry, prediction pasa_asmbl_4575.p2 fails validation. (CTC) CC 35666-36319 GT AGG Valid prediction for GlimmerHMM_glimmerT_25507-T1 Valid prediction for GlimmerHMM_glimmerT_25513-T1 Valid prediction for snap_scaffold_10-snap.1566-T1 Valid prediction for GlimmerHMM_glimmerT_25521-T1 Valid prediction for GlimmerHMM_glimmerT_25520-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.43620_t Couldn't classify 66894, 67023 Sorry, prediction pasa_asmbl_3477.p1 fails validation. (GTG) CA 66894-67023 GT AGG (GTC) AG 67134-67235 GT TGG (GCA) AG 67432-67560 GT AGG (GTG) AG 67711-67851 GT AGG (GTG) AG 67954-68097 GT AGG (GAG) AG 68372-68400 CT GAC -recovered pasa_asmbl_3477.p1, terminal, 68372, 68400 -recovered pasa_asmbl_3477.p1, internal, 67134, 67235 -recovered pasa_asmbl_3477.p1, internal, 67432, 67560 -recovered pasa_asmbl_3477.p1, internal, 67711, 67851 -recovered pasa_asmbl_3477.p1, internal, 67954, 68097 Valid prediction for snap_scaffold_10-snap.1563-T1 Valid prediction for GeneMark_model.43625_t Valid prediction for Augustus_model.g17137.t1 Valid prediction for GeneMark_model.43590_t Valid prediction for CodingQuarry_transcript_5466-T1 Valid prediction for GeneMark_model.43627_t Valid prediction for GeneMark_model.43609_t Valid prediction for GlimmerHMM_glimmerT_25519-T1 Valid prediction for HiQ_model.g17144.t1 Valid prediction for GlimmerHMM_glimmerT_25514-T1 Valid prediction for GlimmerHMM_glimmerT_25518-T1 Valid prediction for GeneMark_model.43615_t Valid prediction for HiQ_model.g17133.t1 Valid prediction for GeneMark_model.43613_t Valid prediction for HiQ_model.g17140.t1 Valid prediction for snap_scaffold_10-snap.1560-T1 Valid prediction for CodingQuarry_transcript_5464-T1 Valid prediction for GeneMark_model.43595_t Valid prediction for Augustus_model.g17138.t1 Valid prediction for GlimmerHMM_glimmerT_25512-T1 Valid prediction for Augustus_model.g17141.t1 Valid prediction for GeneMark_model.43588_t Valid prediction for GeneMark_model.43623_t Valid prediction for Augustus_model.g17128.t1 Valid prediction for CodingQuarry_transcript_5465-T1 Valid prediction for pasa_asmbl_3482.p1 Valid prediction for snap_scaffold_10-snap.1553-T1 Couldn't classify 110281, 110325 Couldn't classify 112863, 112940 Sorry, prediction pasa_asmbl_3470.p1 fails validation. (TTT) TG 110281-110325 GT GGG (GTG) AG 110792-110908 GT AGG (GTG) AG 111335-111436 GT AGG (GAA) AG 112863-112940 GT AGG -recovered pasa_asmbl_3470.p1, internal, 110792, 110908 -recovered pasa_asmbl_3470.p1, internal, 111335, 111436 -recovered pasa_asmbl_3470.p1, internal, 112863, 112940 Valid prediction for GlimmerHMM_glimmerT_25505-T1 Valid prediction for snap_scaffold_10-snap.1526-T1 Valid prediction for snap_scaffold_10-snap.1542-T1 Valid prediction for pasa_asmbl_3476.p1 Valid prediction for GlimmerHMM_glimmerT_25516-T1 Couldn't classify 61264, 61425 Sorry, prediction pasa_asmbl_3478.p1 fails validation. (GCT) TG 61264-61425 GT AGG (GCT) AG 61848-61914 GT GGG (GGG) AG 61992-62104 GT AGG (GAT) AG 62219-62422 TG AAT -recovered pasa_asmbl_3478.p1, terminal, 62219, 62422 -recovered pasa_asmbl_3478.p1, internal, 61848, 61914 -recovered pasa_asmbl_3478.p1, internal, 61992, 62104 Valid prediction for GlimmerHMM_glimmerT_25504-T1 Valid prediction for GlimmerHMM_glimmerT_25511-T1 Valid prediction for CodingQuarry_transcript_5467-T1 Valid prediction for HiQ_model.g17135.t1 Valid prediction for snap_scaffold_10-snap.1548-T1 Valid prediction for snap_scaffold_10-snap.1555-T1 Valid prediction for snap_scaffold_10-snap.1552-T1 Valid prediction for GlimmerHMM_glimmerT_25515-T1 Valid prediction for snap_scaffold_10-snap.1543-T1 Couldn't classify 81662, 81763 Couldn't classify 82541, 82566 Sorry, prediction pasa_asmbl_4021.p1 fails validation. (TTC) AC 81662-81763 GT AGG (CTG) AG 81884-82001 GT TGG (GCT) AG 82191-82373 GT GGG (GCA) AG 82541-82566 AG GCA -recovered pasa_asmbl_4021.p1, internal, 81884, 82001 -recovered pasa_asmbl_4021.p1, internal, 82191, 82373 Valid prediction for Augustus_model.g17136.t1 Couldn't classify 116976, 116999 Sorry, prediction pasa_asmbl_3469.p1 fails validation. (ATG) AC 115926-116028 GT AGG (GGT) AG 116326-116434 GT AGG (CAG) AG 116653-116797 GT AGG (ATG) AG 116976-116999 AC TGA -recovered pasa_asmbl_3469.p1, initial, 115926, 116028 -recovered pasa_asmbl_3469.p1, internal, 116326, 116434 -recovered pasa_asmbl_3469.p1, internal, 116653, 116797 Valid prediction for GlimmerHMM_glimmerT_25508-T1 Valid prediction for pasa_asmbl_3471.p1 Valid prediction for GeneMark_model.43602_t Valid prediction for snap_scaffold_10-snap.1544-T1 Couldn't classify 64492, 64526 Sorry, prediction pasa_asmbl_3982.p1 fails validation. (ATG) GA 63280-63347 GT CTG (ATG) AG 63772-63897 GT AGG (TCA) AG 64268-64374 GT AGG (GTG) AG 64492-64526 AT GGA -recovered pasa_asmbl_3982.p1, initial, 63280, 63347 add_exon() Sorry, pasa_asmbl_3982.p1 63772-63897-initial-1 is invalid. -recovered pasa_asmbl_3982.p1, initial, 63772, 63897 -recovered pasa_asmbl_3982.p1, internal, 63772, 63897 -recovered pasa_asmbl_3982.p1, internal, 64268, 64374 Valid prediction for Augustus_model.g17134.t1 Valid prediction for snap_scaffold_10-snap.1530-T1 Valid prediction for snap_scaffold_10-snap.1541-T1 Valid prediction for GeneMark_model.43603_t Valid prediction for snap_scaffold_10-snap.1531-T1 Valid prediction for CodingQuarry_transcript_5461-T1 Valid prediction for GeneMark_model.43585_t Couldn't classify 121580, 121824 Sorry, prediction pasa_asmbl_3465.p1 fails validation. (TCC) TG 121580-121824 GT TGG (CTT) AG 122096-122245 GT AAG (TAA) AG 122341-122938 GT AGG (CCC) AG 123103-123218 GT GGG (AGT) AG 123435-123604 GT TGG (GTG) AG 123830-124030 GT GAG (AGG) AG 124182-124260 GT AGG (CAC) AG 124466-124572 GT GGG (ATC) AG 124740-124890 GT GGG (CTT) AG 125052-125128 GT GGG (GCA) AG 125322-125458 GT AGG (ACA) AG 125648-125941 AG AGA -recovered pasa_asmbl_3465.p1, terminal, 125648, 125941 -recovered pasa_asmbl_3465.p1, internal, 122096, 122245 -recovered pasa_asmbl_3465.p1, internal, 122341, 122938 -recovered pasa_asmbl_3465.p1, internal, 123103, 123218 -recovered pasa_asmbl_3465.p1, internal, 123435, 123604 -recovered pasa_asmbl_3465.p1, internal, 123830, 124030 -recovered pasa_asmbl_3465.p1, internal, 124182, 124260 -recovered pasa_asmbl_3465.p1, internal, 124466, 124572 -recovered pasa_asmbl_3465.p1, internal, 124740, 124890 -recovered pasa_asmbl_3465.p1, internal, 125052, 125128 -recovered pasa_asmbl_3465.p1, internal, 125322, 125458 Valid prediction for GlimmerHMM_glimmerT_25517-T1 Valid prediction for snap_scaffold_10-snap.1546-T1 Valid prediction for snap_scaffold_10-snap.1551-T1 Valid prediction for snap_scaffold_10-snap.1549-T1 Valid prediction for GeneMark_model.43591_t Valid prediction for CodingQuarry_transcript_5463-T1 Valid prediction for GeneMark_model.43611_t Valid prediction for pasa_asmbl_3480.p1 Valid prediction for HiQ_model.g17139.t1 Valid prediction for GeneMark_model.43618_t Valid prediction for CodingQuarry_transcript_5462-T1 Valid prediction for GeneMark_model.43610_t Valid prediction for snap_scaffold_10-snap.1559-T1 Valid prediction for GeneMark_model.43614_t Valid prediction for Augustus_model.g17127.t1 Valid prediction for GlimmerHMM_glimmerT_25500-T1 Valid prediction for snap_scaffold_10-snap.1565-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 37839, rend_intergenic: 17373 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 168070, rend_intergenic: 163993 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 179049, rend_intergenic: 171650 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 190537, rend_intergenic: 185319 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 204606, rend_intergenic: 199872 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 222889, rend_intergenic: 209848 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 223319, rend_intergenic: 223187 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 241132, rend_intergenic: 236905 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 253816 -exon list size: 695 building trellis 0.1 0.3 0.4 0.6 0.7 0.9 1.0 1.1 1.3 1.4 1.6 1.7 1.9 2.0 2.2 2.3 2.4 2.6 2.7 2.9 3.0 3.2 3.3 3.4 3.6 3.7 3.9 4.0 4.2 4.3 4.4 4.6 4.7 4.9 5.0 5.2 5.3 5.5 5.6 5.7 5.9 6.0 6.2 6.3 6.5 6.6 6.7 6.9 7.0 7.2 7.3 7.5 7.6 7.7 7.9 8.0 8.2 8.3 8.5 8.6 8.8 8.9 9.0 9.2 9.3 9.5 9.6 9.8 9.9 10.0 10.2 10.3 10.5 10.6 10.8 10.9 11.0 11.2 11.3 11.5 11.6 11.8 11.9 12.1 12.2 12.3 12.5 12.6 12.8 12.9 13.1 13.2 13.3 13.5 13.6 13.8 13.9 14.1 14.2 14.3 14.5 14.6 14.8 14.9 15.1 15.2 15.4 15.5 15.6 15.8 15.9 16.1 16.2 16.4 16.5 16.6 16.8 16.9 17.1 17.2 17.4 17.5 17.6 17.8 17.9 18.1 18.2 18.4 18.5 18.7 18.8 18.9 19.1 19.2 19.4 19.5 19.7 19.8 19.9 20.1 20.2 20.4 20.5 20.7 20.8 20.9 21.1 21.2 21.4 21.5 21.7 21.8 22.0 22.1 22.2 22.4 22.5 22.7 22.8 23.0 23.1 23.2 23.4 23.5 23.7 23.8 24.0 24.1 24.2 24.4 24.5 24.7 24.8 25.0 25.1 25.3 25.4 25.5 25.7 25.8 26.0 26.1 26.3 26.4 26.5 26.7 26.8 27.0 27.1 27.3 27.4 27.5 27.7 27.8 28.0 28.1 28.3 28.4 28.6 28.7 28.8 29.0 29.1 29.3 29.4 29.6 29.7 29.8 30.0 30.1 30.3 30.4 30.6 30.7 30.8 31.0 31.1 31.3 31.4 31.6 31.7 31.9 32.0 32.1 32.3 32.4 32.6 32.7 32.9 33.0 33.1 33.3 33.4 33.6 33.7 33.9 34.0 34.1 34.3 34.4 34.6 34.7 34.9 35.0 35.2 35.3 35.4 35.6 35.7 35.9 36.0 36.2 36.3 36.4 36.6 36.7 36.9 37.0 37.2 37.3 37.4 37.6 37.7 37.9 38.0 38.2 38.3 38.5 38.6 38.7 38.9 39.0 39.2 39.3 39.5 39.6 39.7 39.9 40.0 40.2 40.3 40.5 40.6 40.7 40.9 41.0 41.2 41.3 41.5 41.6 41.8 41.9 42.0 42.2 42.3 42.5 42.6 42.8 42.9 43.0 43.2 43.3 43.5 43.6 43.8 43.9 44.0 44.2 44.3 44.5 44.6 44.8 44.9 45.1 45.2 45.3 45.5 45.6 45.8 45.9 46.1 46.2 46.3 46.5 46.6 46.8 46.9 47.1 47.2 47.3 47.5 47.6 47.8 47.9 48.1 48.2 48.4 48.5 48.6 48.8 48.9 49.1 49.2 49.4 49.5 49.6 49.8 49.9 50.1 50.2 50.4 50.5 50.6 50.8 50.9 51.1 51.2 51.4 51.5 51.6 51.8 51.9 52.1 52.2 52.4 52.5 52.7 52.8 52.9 53.1 53.2 53.4 53.5 53.7 53.8 53.9 54.1 54.2 54.4 54.5 54.7 54.8 54.9 55.1 55.2 55.4 55.5 55.7 55.8 56.0 56.1 56.2 56.4 56.5 56.7 56.8 57.0 57.1 57.2 57.4 57.5 57.7 57.8 58.0 58.1 58.2 58.4 58.5 58.7 58.8 59.0 59.1 59.3 59.4 59.5 59.7 59.8 60.0 60.1 60.3 60.4 60.5 60.7 60.8 61.0 61.1 61.3 61.4 61.5 61.7 61.8 62.0 62.1 62.3 62.4 62.6 62.7 62.8 63.0 63.1 63.3 63.4 63.6 63.7 63.8 64.0 64.1 64.3 64.4 64.6 64.7 64.8 65.0 65.1 65.3 65.4 65.6 65.7 65.9 66.0 66.1 66.3 66.4 66.6 66.7 66.9 67.0 67.1 67.3 67.4 67.6 67.7 67.9 68.0 68.1 68.3 68.4 68.6 68.7 68.9 69.0 69.2 69.3 69.4 69.6 69.7 69.9 70.0 70.2 70.3 70.4 70.6 70.7 70.9 71.0 71.2 71.3 71.4 71.6 71.7 71.9 72.0 72.2 72.3 72.5 72.6 72.7 72.9 73.0 73.2 73.3 73.5 73.6 73.7 73.9 74.0 74.2 74.3 74.5 74.6 74.7 74.9 75.0 75.2 75.3 75.5 75.6 75.8 75.9 76.0 76.2 76.3 76.5 76.6 76.8 76.9 77.0 77.2 77.3 77.5 77.6 77.8 77.9 78.0 78.2 78.3 78.5 78.6 78.8 78.9 79.1 79.2 79.3 79.5 79.6 79.8 79.9 80.1 80.2 80.3 80.5 80.6 80.8 80.9 81.1 81.2 81.3 81.5 81.6 81.8 81.9 82.1 82.2 82.4 82.5 82.6 82.8 82.9 83.1 83.2 83.4 83.5 83.6 83.8 83.9 84.1 84.2 84.4 84.5 84.6 84.8 84.9 85.1 85.2 85.4 85.5 85.7 85.8 85.9 86.1 86.2 86.4 86.5 86.7 86.8 86.9 87.1 87.2 87.4 87.5 87.7 87.8 87.9 88.1 88.2 88.4 88.5 88.7 88.8 89.0 89.1 89.2 89.4 89.5 89.7 89.8 90.0 90.1 90.2 90.4 90.5 90.7 90.8 91.0 91.1 91.2 91.4 91.5 91.7 91.8 92.0 92.1 92.3 92.4 92.5 92.7 92.8 93.0 93.1 93.3 93.4 93.5 93.7 93.8 94.0 94.1 94.3 94.4 94.5 94.7 94.8 95.0 95.1 95.3 95.4 95.6 95.7 95.8 96.0 96.1 96.3 96.4 96.6 96.7 96.8 97.0 97.1 97.3 97.4 97.6 97.7 97.8 98.0 98.1 98.3 98.4 98.6 98.7 98.9 99.0 99.1 99.3 99.4 99.6 99.7 99.9 -found 28 predictions from path traversal Error with prediction: snap lend_intergenic: 37839, rend_intergenic: 17373 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 168070, rend_intergenic: 163993 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 179049, rend_intergenic: 171650 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 190537, rend_intergenic: 185319 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 204606, rend_intergenic: 199872 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 222889, rend_intergenic: 209848 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 223319, rend_intergenic: 223187 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 241132, rend_intergenic: 236905 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 26 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 11687 -exon list size: 3 building trellis 20.0 40.0 60.0 80.0 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 10550 -exon list size: 2 building trellis 25.0 50.0 75.0 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 242349 - 253816 -exon list size: 5 building trellis 14.3 28.6 42.9 57.1 71.4 85.7 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 242691 - 253816 -exon list size: 4 building trellis 16.7 33.3 50.0 66.7 83.3 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 242846 - 253816 -exon list size: 3 building trellis 20.0 40.0 60.0 80.0 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support